View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10860_low_6 (Length: 338)
Name: NF10860_low_6
Description: NF10860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10860_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 119; Significance: 9e-61; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 20 - 182
Target Start/End: Original strand, 14988280 - 14988445
Alignment:
| Q |
20 |
ggtaggaaaccacgttgcagcaaaagctaggaaagtaa--ttctagatttccacaaaagtacctccttgaaacgtgggtttggcttttccatcgccaaa- |
116 |
Q |
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| T |
14988280 |
ggtaggaaaccacgttgcagcaaaagctaggaaagtaagcttttagattttcacgaaagtagctccttgaaacgtgggtttggctttcccaccgccaaaa |
14988379 |
T |
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| Q |
117 |
ccaaacagatacgtagtataccaagggcttaatttcttttgaattcttatattgttttagtatata |
182 |
Q |
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| T |
14988380 |
ccaaacagatacctagtataccaagggcttaatttcttttgaattcttatattgttttagtatata |
14988445 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 238 - 328
Target Start/End: Original strand, 14988499 - 14988592
Alignment:
| Q |
238 |
taagcttgatttttgaatcctgaaatacaatgatttacaagat---catgatcaaagaaacatagatattagaaggtctgggattctatctctg |
328 |
Q |
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| T |
14988499 |
taagcttgatttttgaatcctaaaatacaatgatttacaagatgatcatgatcaaagaaacatagatattagaaggtctgggattccatctctg |
14988592 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 64; Significance: 6e-28; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 20 - 128
Target Start/End: Original strand, 20994489 - 20994599
Alignment:
| Q |
20 |
ggtaggaaaccacgttgcagcaaaagctaggaaagtaa--ttctagatttccacaaaagtacctccttgaaacgtgggtttggcttttccatcgccaaac |
117 |
Q |
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| T |
20994489 |
ggtaggaaaccacgttgcagcaaaagctaggaaagtaagcttctatttttccacgaaagtagctccttgaaacgtgtgtttggcttttctactgccaacc |
20994588 |
T |
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| Q |
118 |
caaacagatac |
128 |
Q |
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| T |
20994589 |
caaacagatac |
20994599 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 89 - 124
Target Start/End: Complemental strand, 51186703 - 51186668
Alignment:
| Q |
89 |
acgtgggtttggcttttccatcgccaaaccaaacag |
124 |
Q |
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| T |
51186703 |
acgtgggtttggcttttccaccgccaaaccaaacag |
51186668 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 84 - 124
Target Start/End: Original strand, 35154639 - 35154679
Alignment:
| Q |
84 |
ttgaaacgtgggtttggcttttccatcgccaaaccaaacag |
124 |
Q |
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| T |
35154639 |
ttgaaacgtatgtttggcttttccattgccaaaccaaacag |
35154679 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 56 - 128
Target Start/End: Original strand, 27383979 - 27384051
Alignment:
| Q |
56 |
aattctagatttccacaaaagtacctccttgaaacgtgggtttggcttttccatcgccaaaccaaacagatac |
128 |
Q |
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| T |
27383979 |
aattctacatttccacaaaagtagctctttgaaatgtgggtttgactttcccaccaccaaaccaaatagatac |
27384051 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 42 - 124
Target Start/End: Original strand, 11026804 - 11026888
Alignment:
| Q |
42 |
aaagctaggaaagtaa--ttctagatttccacaaaagtacctccttgaaacgtgggtttggcttttccatcgccaaaccaaacag |
124 |
Q |
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| T |
11026804 |
aaagctaggaaagaaagcttctcaatttccacgaaagtcgctctttgaaacgtgggtttggctttcccactgccaaaccaaacag |
11026888 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 126
Target Start/End: Complemental strand, 2212693 - 2212656
Alignment:
| Q |
89 |
acgtgggtttggcttttccatcgccaaaccaaacagat |
126 |
Q |
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| T |
2212693 |
acgtgggtttggctttcccaccgccaaaccaaacagat |
2212656 |
T |
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