View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10860_low_8 (Length: 309)

Name: NF10860_low_8
Description: NF10860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10860_low_8
NF10860_low_8
[»] chr1 (1 HSPs)
chr1 (2-292)||(44914787-44915077)


Alignment Details
Target: chr1 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 2 - 292
Target Start/End: Complemental strand, 44915077 - 44914787
Alignment:
Q  2 actatgtttagtggttgaaaatactgtttgttgatccaaatatagcactagcttccaagtttccgtattctctcttatctaatttcaaacctataagtta 101  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44915077 actatgtttagtggttgaaaatactgtttgttgatccaaatatagcactagcttccaagtttccgtattctctcttatctaatttcaaacctataagtta 44914978  T
Q  102 cataattccagtgaaataggaacaacacaaataccaaatgcaaagaacttggtttaaattgatgcattgacaattagttagttcaatcacgcacatattg 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44914977 cataattccagtgaaataggaacaacacaaataccaaatgcaaagaacttggtttaaattgatgcattgacaattagttagttcaatcacgcacatattg 44914878  T
Q  202 gtaagcatatgaagctaattaatgctatatttgctatgtaaaagtttattcctcactcacatatataagcagttgctatggacaacatatg 292  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  44914877 gtaagcatatgaagctaattaatgctatatttgctatgtaaaagtttattcctcactcacatatataagcaattgctatggacaacatatg 44914787  T

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