View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10861_high_2 (Length: 405)
Name: NF10861_high_2
Description: NF10861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10861_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 19 - 395
Target Start/End: Complemental strand, 38081705 - 38081319
Alignment:
| Q |
19 |
ctgatgaggatgcagtggtggcattaacatatgtctttagtttaatcgtaagtgtggctttgggccaatcaaagtcacttgtaactgccttagaatagaa |
118 |
Q |
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| T |
38081705 |
ctgatgaggatgcagtggtggcattaacatatgtctttagtttaatcggaagtgtggctttgtgccaatcaaagtcacttgtaactgccttagaatagaa |
38081606 |
T |
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| Q |
119 |
ttgctcatattaagcagcaatag-------ccatcatgttattcttaaaggtaaattcaataagtcattagctttgtgaacaaggctcgcgatcattatt |
211 |
Q |
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| T |
38081605 |
ttgctcatattaagcagcaataggcaatagccatcatggtattcttaaaggtaaattcaacaagtcattagctttgtgaacaaggctcgcgatcattatt |
38081506 |
T |
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| Q |
212 |
agaatatataagtaagataaatgcaatttttcatgtgaacagaaaaatgaccaataaggagttctggctaaacttgaatt---aatatataggactgact |
308 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
38081505 |
agaatatataagtaagataaatgcaatttttcctgtgaacagaaaaatgaccaataaggagttctggctaaacttgaattaataatatataggactgact |
38081406 |
T |
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| Q |
309 |
ttaaacttgtcatgttacttgtgatacgtttgcgggattgtttttcccgacaggcacatcatttctatattaataatctaatctctg |
395 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
38081405 |
ttaaacttgtcatgttacttgtgatacgtttgtgggattgtttttcccgacaggcacatcatttctatattaataatctaatttctg |
38081319 |
T |
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