View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10861_low_11 (Length: 326)
Name: NF10861_low_11
Description: NF10861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10861_low_11 |
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| [»] scaffold0557 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 254; Significance: 1e-141; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 320
Target Start/End: Complemental strand, 1460428 - 1460107
Alignment:
| Q |
1 |
taacaaactacaaacaacctcaaaaccaacttgaacatccatcttcatacctaatgtgggtctgagtccaattcttatatcgcaattcttaactcaattc |
100 |
Q |
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|||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| ||||||||||||||| | |||| ||||||||||||||| || |
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| T |
1460428 |
taacaaactacaaacaacttcaaaaccaacttgaacacccatcttcatacctaatgtaggtctgagtccaattttcatattacaattcttaactcaactc |
1460329 |
T |
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| Q |
101 |
taatacaattttaaatagttatgaatctcatctcaaaagctaactcaaaga-tgagatcaaaacatatttaagatgac-tagtgtgtgtggttttgcaaa |
198 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| |||||||||||||||||| || ||| |||||||||||||| |
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| T |
1460328 |
taatacaattttaaatagttatggatctcatctcaaaagctaactcaaagaatgagatccaaacatatttaagatgacctaatgtatgtggttttgcaaa |
1460229 |
T |
|
| Q |
199 |
atattggacccactttaggagtaactttccatgaggtaagatatttttatcaaaagaaatttgttcaattcaagttgataatctagtagtagtagtaaat |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
1460228 |
atattggacccactttaggagtaactttccatgaggtaagatatttttatcaaaagaaatttgttcaattcaagttgataatgtagtagtagtagtaaat |
1460129 |
T |
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| Q |
299 |
tattttccttctgtggacattg |
320 |
Q |
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|||||||||||||||||||||| |
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| T |
1460128 |
tattttccttctgtggacattg |
1460107 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 9928857 - 9928899
Alignment:
| Q |
1 |
taacaaactacaaacaacctcaaaaccaacttgaacatccatc |
43 |
Q |
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| T |
9928857 |
taacaaactacaaacaacttcaaaactaacttcaacatccatc |
9928899 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 36165211 - 36165251
Alignment:
| Q |
1 |
taacaaactacaaacaacctcaaaaccaacttgaacatcca |
41 |
Q |
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| T |
36165211 |
taacaaactacaaacaatttcaaaaccaacttcaacatcca |
36165251 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0557 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0557
Description:
Target: scaffold0557; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 2 - 75
Target Start/End: Complemental strand, 4667 - 4594
Alignment:
| Q |
2 |
aacaaactacaaacaacctcaaaaccaacttgaacatccatcttcatacctaatgtgggtctgagtccaattct |
75 |
Q |
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||||||||||||||||| ||||||||||||| |||||| | | |||| | || ||||||||| |||||||||| |
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| T |
4667 |
aacaaactacaaacaacttcaaaaccaacttcaacatcaaccctcatgcttagcgtgggtctgggtccaattct |
4594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 5473308 - 5473262
Alignment:
| Q |
1 |
taacaaactacaaacaacctcaaaaccaacttgaacatccatcttca |
47 |
Q |
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| T |
5473308 |
taacaaactacaaacaacttcaaaaccaacttcaacacccaccttca |
5473262 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 95
Target Start/End: Original strand, 28432063 - 28432148
Alignment:
| Q |
10 |
acaaacaacctcaaaaccaacttgaacatccatcttcatacctaatgtgggtctgagtccaattcttatatcgcaattcttaactc |
95 |
Q |
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| T |
28432063 |
acaaacaacatcaaaaccaacttcagcacccaccctcttgcctagtgtgggtctgggtccaattcccacattgcaattcttaactc |
28432148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 38
Target Start/End: Original strand, 31540323 - 31540359
Alignment:
| Q |
2 |
aacaaactacaaacaacctcaaaaccaacttgaacat |
38 |
Q |
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| T |
31540323 |
aacaaactacaaacaacttcaaaaccaacttcaacat |
31540359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 38
Target Start/End: Complemental strand, 10645566 - 10645530
Alignment:
| Q |
2 |
aacaaactacaaacaacctcaaaaccaacttgaacat |
38 |
Q |
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||||||||||||||||||||||||||| ||| ||||| |
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| T |
10645566 |
aacaaactacaaacaacctcaaaaccagcttcaacat |
10645530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 30602372 - 30602336
Alignment:
| Q |
1 |
taacaaactacaaacaacctcaaaaccaacttgaaca |
37 |
Q |
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|||||||||||||||||| ||||||||||||| |||| |
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| T |
30602372 |
taacaaactacaaacaacttcaaaaccaacttcaaca |
30602336 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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