View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10861_low_16 (Length: 292)
Name: NF10861_low_16
Description: NF10861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10861_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 18 - 281
Target Start/End: Complemental strand, 43056291 - 43056028
Alignment:
| Q |
18 |
gaaactcactctgatgttggattggaagcaaggtggaaggaaatattaaaagttgtgcgttttcagtcacgactcttagggcagcttcggcgtgaatgac |
117 |
Q |
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| T |
43056291 |
gaaactcactctgatgttggattggaagcaaggtggaaggaaatattaaaagttgtgcgttttcagtcacgactcttagggcagcttcggcgtgaatgac |
43056192 |
T |
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| Q |
118 |
ttcaacaatcaggttgtctaaggcatccatagatggtctgtagaggaaatattatctcgatatatcagatttnnnnnnnnnnnnnnnnnnnncaatgaca |
217 |
Q |
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| T |
43056191 |
ttcaacaatcaggttgtctaaggcatccatagatggtctgtagaggaaatattatctcgatatatcagatttaaaaaataaaaatacaaaaacaatgaca |
43056092 |
T |
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| Q |
218 |
tgatgtaaaacatgtatgagaattacccttcatactcgggaaataaataaagagcaatattctt |
281 |
Q |
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| T |
43056091 |
tgatgtaaaacatgtatgagaattacccttcatactcgggaaataaataaagagcaatattctt |
43056028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 22 - 170
Target Start/End: Complemental strand, 44806121 - 44805973
Alignment:
| Q |
22 |
ctcactctgatgttggattggaagcaaggtggaaggaaatattaaaagttgtgcgttttcagtcacgactcttagggcagcttcggcgtgaatgacttca |
121 |
Q |
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||||||||||||| |||||||||||||| |||||||| |||||||| ||| |||||||| || ||||||| ||||||||| | | ||||| ||| |
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| T |
44806121 |
ctcactctgatgtcggattggaagcaagtcagaaggaaaaattaaaagcactgcattttcagttacaactcttacggcagcttcagtgcaaatgatatca |
44806022 |
T |
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| Q |
122 |
acaatcaggttgtctaaggcatccatagatggtctgtagaggaaatatt |
170 |
Q |
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||| ||| ||||| ||||| | |||||| ||| ||||||||||||| |
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| T |
44806021 |
tcaaccagcttgtcaaaggcctttatagataatctatagaggaaatatt |
44805973 |
T |
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