View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10861_low_17 (Length: 284)
Name: NF10861_low_17
Description: NF10861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10861_low_17 |
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Alignment Details
Target: chr8 (Bit Score: 206; Significance: 1e-113; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 269
Target Start/End: Complemental strand, 42202008 - 42201738
Alignment:
| Q |
1 |
caacaagtgataaacaaatt----ttaaatattatataacaaatcacaggtgcttgagtagttaaaatatcaaccgttaaannnnnnncactttactaac |
96 |
Q |
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| T |
42202008 |
caacaagtgataaacaaattaattttaaatat---ataacaaatcacaggtgcttgagtagttaaaatatcaaccgttaaatttttttcactttactaac |
42201912 |
T |
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| Q |
97 |
tactcacttt-agatgaagcaaatttttgaaacaaaataataagttaagattctaccaatgacataaccatcgcgatgtttgtcccatggtcttgaagcc |
195 |
Q |
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| T |
42201911 |
tactcacttttagatgaatcaaatttttgaaacaaaataataagttaagattctaccaatgacataaccatcgcgatgtttgtcccatggtcttgaagcc |
42201812 |
T |
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| Q |
196 |
tttttaggctcttcattcctttgagacaaagccctgcaagcaatcaatcctacaacacccataggtataattga |
269 |
Q |
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| T |
42201811 |
tttttaggctcttcattcctttgagacaaagccctgcaagcaatcaatcctccaacacccataggtataattga |
42201738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 163 - 254
Target Start/End: Complemental strand, 42186326 - 42186235
Alignment:
| Q |
163 |
ccatcgcgatgtttgtcccatggtcttgaagcctttttaggctcttcattcctttgagacaaagccctgcaagcaatcaatcctacaacacc |
254 |
Q |
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| T |
42186326 |
ccatcgcggtgtttgtcccatggtcttgaagccttcttaggctcttcattcctctgagacaatgccctgcaagcaatgaatgctccaacacc |
42186235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 163 - 238
Target Start/End: Complemental strand, 42196008 - 42195933
Alignment:
| Q |
163 |
ccatcgcgatgtttgtcccatggtcttgaagcctttttaggctcttcattcctttgagacaaagccctgcaagcaa |
238 |
Q |
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||||||||||||||||||||||||||||| ||| | | |||||||||||||||||||||||||||||||||||||| |
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| T |
42196008 |
ccatcgcgatgtttgtcccatggtcttgacgccctctgaggctcttcattcctttgagacaaagccctgcaagcaa |
42195933 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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