View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10861_low_18 (Length: 280)
Name: NF10861_low_18
Description: NF10861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10861_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 18 - 228
Target Start/End: Complemental strand, 3583459 - 3583249
Alignment:
| Q |
18 |
gttttggtcatgatttctcattgaaatatatgacaaaactttcatgatctttgaagatcaatttcttgtttgaatctgtgtgtggatcttcgttttaggc |
117 |
Q |
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| T |
3583459 |
gttttggtcatgatttctcattgaaatatatgacaaaactttcatgatctttgaagatcaatttcttgtttgaatctgtgtgtggatcttcgttttaggc |
3583360 |
T |
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| Q |
118 |
aattgtaaatctatagcgaaatagataacttttacatgttatttatgatattgcgaaaaagaaataaatatattccatacagatcttccccacgcttgaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3583359 |
aattgtaaatctatagcgaaatagataacttttacatgttatttatgatattgcgaaaaagaaataaatatattccatacagatcttccccacgcttgaa |
3583260 |
T |
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| Q |
218 |
taatatgatta |
228 |
Q |
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| T |
3583259 |
taatatgatta |
3583249 |
T |
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