View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10861_low_19 (Length: 272)
Name: NF10861_low_19
Description: NF10861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10861_low_19 |
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Alignment Details
Target: chr5 (Bit Score: 209; Significance: 1e-114; HSPs: 9)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 18 - 262
Target Start/End: Complemental strand, 15837155 - 15836911
Alignment:
| Q |
18 |
attacacattaattatttaacttatgtaaaaaagagactcttaatcaaaggatataatttaaatgctagttcaacagagccacaaaagcaaatacaatgg |
117 |
Q |
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| T |
15837155 |
attacacattaattatttaacttatgtaaaaaagagactcttaatcaaaggatataatttaaatgctagttcaacagagccacaaaagcaaatacaatgg |
15837056 |
T |
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| Q |
118 |
acaaagagataaagaggctagaactagacccaaaaagtttaaagcacccactactaccatctgagtttgcattggcttttgtagagttggaatagagttt |
217 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| ||||||||||||| |
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| T |
15837055 |
acaaagagattaagaggctagaactagacccaaaaagtttaaagcacccactactatcatctgagtttgcattggctttagtagagctggaatagagttt |
15836956 |
T |
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| Q |
218 |
ttggatggctatgttatctgaatctgttatctgcaccttcctttg |
262 |
Q |
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|||||| |||| |||||| ||||||||||||||||| ||| |||| |
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| T |
15836955 |
ttggattgctaagttatcagaatctgttatctgcacattcttttg |
15836911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 18 - 264
Target Start/End: Complemental strand, 15820104 - 15819859
Alignment:
| Q |
18 |
attacacattaattatttaacttatgtaaaaaagagactcttaatcaaaggatataatttaaatgctagttcaacagagccacaaaagcaaatacaatgg |
117 |
Q |
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||||||||||||||||| ||||||||||||||| ||||||| ||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15820104 |
attacacattaattattaaacttatgtaaaaaaaagactct-aatcaaatgacataatttaaatgctagttcaacagagccacaaaagcaaatacaatgg |
15820006 |
T |
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| Q |
118 |
acaaagagataaagaggctagaactagacccaaaaagtttaaagcacccactactaccatctgagtttgcattggcttttgtagagttggaatagagttt |
217 |
Q |
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| T |
15820005 |
acaaagagataaagaggctagaactagacccagaaagtttaaagcacccactactatcatccgagtttgcattggcttttgtagagctggaatagagttt |
15819906 |
T |
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| Q |
218 |
ttggatggctatgttatctgaatctgttatctgcaccttcctttgct |
264 |
Q |
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| T |
15819905 |
ttggattgctaagttatctgaatctgttatctgcaccttcttttgct |
15819859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 25 - 135
Target Start/End: Complemental strand, 15724328 - 15724219
Alignment:
| Q |
25 |
attaattatttaacttatgtaaaaaagagactcttaatcaaaggatataatttaaatgctagttcaacagagccacaaaagcaaatacaatggacaaaga |
124 |
Q |
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|||||| |||||||||||||||||||||| |||| ||| || |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
15724328 |
attaatcatttaacttatgtaaaaaagagtctct-aatgaagggatataatttaaatgctagttcaacagagccacaaaagcaaatccaatggacaaaga |
15724230 |
T |
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| Q |
125 |
gataaagaggc |
135 |
Q |
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| T |
15724229 |
ggcaaagaggc |
15724219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 180 - 262
Target Start/End: Complemental strand, 15724207 - 15724125
Alignment:
| Q |
180 |
gagtttgcattggcttttgtagagttggaatagagtttttggatggctatgttatctgaatctgttatctgcaccttcctttg |
262 |
Q |
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| T |
15724207 |
gagtttgcattggcttttgtagagctggaatagagttgttgtatggctaagttatctgattctgttatctgcaccttcctttg |
15724125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 142 - 262
Target Start/End: Complemental strand, 15721732 - 15721615
Alignment:
| Q |
142 |
tagacccaaaaagtttaaagcacccactactaccatctgagtttgcattggcttttgtagagttggaatagagtttttggatggctatgttatctgaatc |
241 |
Q |
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||||| |||||||||| |||||||||||| | || |||| || ||||||||| |||||||| ||||||| ||| || |||| |||||||||| | |
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| T |
15721732 |
tagactcaaaaagtttgaagcacccactatgatca---gagtctggattggctttgacagagttggtgtagagttgttgaatagctaagttatctgaaac |
15721636 |
T |
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| Q |
242 |
tgttatctgcaccttcctttg |
262 |
Q |
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||||||||||||||||||||| |
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| T |
15721635 |
tgttatctgcaccttcctttg |
15721615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 71 - 168
Target Start/End: Complemental strand, 15824401 - 15824303
Alignment:
| Q |
71 |
ataatttaa-atgctagttcaacagagccacaaaagcaaatacaatggacaaagagataaagaggctagaactagacccaaaaagtttaaagcacccac |
168 |
Q |
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||||||||| |||||||||||| |||||||||||||||||| ||| | |||||||| ||| ||| | |||||| || ||||| | | | |||||||||| |
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| T |
15824401 |
ataatttaagatgctagttcaagagagccacaaaagcaaatccaaggaacaaagaggtaaggagaccagaactggatccaaacattgtgaagcacccac |
15824303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 148 - 257
Target Start/End: Complemental strand, 15814320 - 15814214
Alignment:
| Q |
148 |
caaaaagtttaaagcacccactactaccatctgagtttgcattggcttttgtagagttggaatagagtttttggatggctatgttatctgaatctgttat |
247 |
Q |
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||||||| ||||||||||||||| | || ||||||| ||||||||| | || ||||| ||||||| ||| || ||| |||||||||||||||||| |
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| T |
15814320 |
caaaaagcttaaagcacccactatgatca---gagtttggattggctttggcagtgttggtgtagagttgttgtatagcttggttatctgaatctgttat |
15814224 |
T |
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| Q |
248 |
ctgcaccttc |
257 |
Q |
| |
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||||||||| |
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| T |
15814223 |
ttgcaccttc |
15814214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 262
Target Start/End: Complemental strand, 15824285 - 15824227
Alignment:
| Q |
204 |
ttggaatagagtttttggatggctatgttatctgaatctgttatctgcaccttcctttg |
262 |
Q |
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|||||||||| || ||| |||||| |||||||||||||||||| |||| ||||||||| |
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| T |
15824285 |
ttggaatagatttgttgtatggcttggttatctgaatctgttatgtgcagcttcctttg |
15824227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 210 - 262
Target Start/End: Complemental strand, 15717779 - 15717727
Alignment:
| Q |
210 |
tagagtttttggatggctatgttatctgaatctgttatctgcaccttcctttg |
262 |
Q |
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||||||| ||| |||||| |||||||||| ||||||||||||||||| |||| |
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| T |
15717779 |
tagagttgttgtatggcttggttatctgaaactgttatctgcaccttcttttg |
15717727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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