View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10861_low_2 (Length: 439)
Name: NF10861_low_2
Description: NF10861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10861_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 327; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 1 - 378
Target Start/End: Original strand, 2572361 - 2572741
Alignment:
| Q |
1 |
gacgttaccaaggaagaaggaaattaatccaaaggataatcacatatctttccaggtcagattttccctaaaattaaaattattgattacgtttcaaatt |
100 |
Q |
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| T |
2572361 |
gacgttaccaaggaagaaggaaattaatccaaaggataatcacatatctttccaggtcagattttccctaaacttaaaattattgattacgtttcaaatt |
2572460 |
T |
|
| Q |
101 |
tggnnnnnnnntgttacttagaaagaaccaaaatagaagacgtacttcaataaatgaaggaacttgataaaaaatacattgaacctaaagtgacgcatag |
200 |
Q |
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| T |
2572461 |
tggaaaaaaaatgtgacttagaaagaaccaaaatagaagacgtacttcaataaatgaaggaacttgataaaaaatacattgaacctaaagtgacgcatag |
2572560 |
T |
|
| Q |
201 |
aaaaatccaaatttaaaactaaatata---gatcacactaaatttaaaactaaaacactcacctagtcatcatagacacgttttgtgatgctttttaagg |
297 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
2572561 |
aaaaatccaaatttaaaactaaatataatagatcacactaaatttaaaactaaaacactcacctagtcatcatagacacgttttgtgatcctttttaagg |
2572660 |
T |
|
| Q |
298 |
atatgcaatggcttttaaggatcttatcctctaaggttgcctcaaatcacaatagaatatagagccaaatcatgtaattta |
378 |
Q |
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| T |
2572661 |
atatgcaatggcttttaaggatcttatcctctaaggttgcctcaaatcacaatagaatatagagtcaaatcatgtaattta |
2572741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 388 - 419
Target Start/End: Original strand, 2572777 - 2572808
Alignment:
| Q |
388 |
attagttcatgtgagctttcctcggttgatag |
419 |
Q |
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| T |
2572777 |
attagttcatgtgagctttcctcggttgatag |
2572808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 56
Target Start/End: Complemental strand, 44546196 - 44546148
Alignment:
| Q |
8 |
ccaaggaagaaggaaattaatccaaaggataatcacatatctttccagg |
56 |
Q |
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||||||||||||||||||||| ||||||||||||| || || ||||||| |
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| T |
44546196 |
ccaaggaagaaggaaattaatacaaaggataatcatatctcattccagg |
44546148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 48
Target Start/End: Complemental strand, 44555811 - 44555771
Alignment:
| Q |
8 |
ccaaggaagaaggaaattaatccaaaggataatcacatatc |
48 |
Q |
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| T |
44555811 |
ccaaggaagaacgaaattaatccaaaggataatcatatatc |
44555771 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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