View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10861_low_21 (Length: 253)
Name: NF10861_low_21
Description: NF10861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10861_low_21 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 13 - 253
Target Start/End: Original strand, 10883653 - 10883893
Alignment:
| Q |
13 |
cacagacaaagatgacaggttctgagtgagagagatttgctgaagtggttctcaaggcacatccattcaattcactggtatttttcagtttgggccacct |
112 |
Q |
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| T |
10883653 |
cacagacaaagatgacaggttctgagtgagagagatttgctgaagtggttctcaaggcacatccattcaattcactggtatttttcagtttgggccacct |
10883752 |
T |
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| Q |
113 |
atatatacatcacaaacagtgtatactttaatatataccatgcattaatattatgccctgaaatccttgaccagcatatcaaatacatgaaacgctctac |
212 |
Q |
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| T |
10883753 |
atatatacatcacaaacagtatatactttaatatataccatgcattaatattatgccctgaaatccttttccagcatatcaaatacatgaaacgctctac |
10883852 |
T |
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| Q |
213 |
taagctttaaactcaagaaagccacaaaccaaagatgcagt |
253 |
Q |
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| T |
10883853 |
taagctttaaactcaagaaagccacaaaccaaagatgcagt |
10883893 |
T |
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Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 48 - 94
Target Start/End: Complemental strand, 36643115 - 36643069
Alignment:
| Q |
48 |
tttgctgaagtggttctcaaggcacatccattcaattcactggtatt |
94 |
Q |
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| T |
36643115 |
tttgctgaagtggctctcaaggcacatccattcaattcactagtatt |
36643069 |
T |
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