View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10861_low_22 (Length: 251)
Name: NF10861_low_22
Description: NF10861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10861_low_22 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 33120158 - 33119924
Alignment:
| Q |
1 |
cagtcccaagaagttctatgacagataaaaaggattgagaaacaatgaggttagagacccacactgttgttgatgctattcctccacatattcctctata |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33120158 |
cagtcccaagaagttctatgacagataaaaaggattgagaaacaatgaggttagagacccacactgttgttgatgctattcctccacatattcctctata |
33120059 |
T |
|
| Q |
101 |
ccttaaagggtatatttcagagttgataacccatggaacagttcccattcctggtgaaaagaatattatgtagactgctaaaccaactattgccaaccat |
200 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
33120058 |
ccttaaagggtgtatttcagagttgataacccatggaaccgttcccattcctggtgaaaagaatattatgtagactgctaaaccaactatcgccaaccat |
33119959 |
T |
|
| Q |
201 |
cctattttgcttggacatccttgtgtgtaccaatc |
235 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| |
|
|
| T |
33119958 |
cctatattgcttggacatccttgtgtgtaccaatc |
33119924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 23 - 232
Target Start/End: Complemental strand, 33116924 - 33116715
Alignment:
| Q |
23 |
agataaaaaggattgagaaacaatgaggttagagacccacactgttgttgatgctattcctccacatattcctctataccttaaagggtatatttcagag |
122 |
Q |
| |
|
|||||||||||||||||||||||| ||||| |||| ||| || ||||||| || ||||||||||| | ||||||||||||||||||||| || |||||| |
|
|
| T |
33116924 |
agataaaaaggattgagaaacaataaggtttgagatccaaacacttgttgaagccattcctccacagactcctctataccttaaagggtaaatctcagag |
33116825 |
T |
|
| Q |
123 |
ttgataacccatggaacagttcccattcctggtgaaaagaatattatgtagactgctaaaccaactattgccaaccatcctattttgcttggacatcctt |
222 |
Q |
| |
|
|| || |||||||||||||| |||||||| ||||||||||| | ||| |||| || || |||| | ||| | ||| || | |||||| |||||||||| |
|
|
| T |
33116824 |
tttatgacccatggaacagtccccattccaggtgaaaagaacagtatatagagagccaatccaatcagtgcaagccaacccaatttgctaggacatcctt |
33116725 |
T |
|
| Q |
223 |
gtgtgtacca |
232 |
Q |
| |
|
|||| ||||| |
|
|
| T |
33116724 |
gtgtatacca |
33116715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 82; Significance: 8e-39; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 33 - 174
Target Start/End: Original strand, 21491884 - 21492025
Alignment:
| Q |
33 |
gattgagaaacaatgaggttagagacccacactgttgttgatgctattcctccacatattcctctataccttaaagggtatatttcagagttgataaccc |
132 |
Q |
| |
|
||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||||| || || || ||||||||||| | ||||| |
|
|
| T |
21491884 |
gattgagaaacaacaaggttggaaacccacactgttgttgatgctattcctccacatattcctctatacctcaatggatagatttcagagttaacaaccc |
21491983 |
T |
|
| Q |
133 |
atggaacagttcccattcctggtgaaaagaatattatgtaga |
174 |
Q |
| |
|
||||||| ||||||||||| || || |||||||| ||||||| |
|
|
| T |
21491984 |
atggaactgttcccattccaggcgagaagaatatgatgtaga |
21492025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 68 - 165
Target Start/End: Original strand, 21558479 - 21558576
Alignment:
| Q |
68 |
tgttgatgctattcctccacatattcctctataccttaaagggtatatttcagagttgataacccatggaacagttcccattcctggtgaaaagaata |
165 |
Q |
| |
|
|||||| || |||||||||||||||||||| || ||||| || |||||||||||||| | |||||||||||| ||||||||||||||||| ||||||| |
|
|
| T |
21558479 |
tgttgacgcgattcctccacatattcctctgtatcttaatggatatatttcagagtttacaacccatggaactgttcccattcctggtgagaagaata |
21558576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University