View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10861_low_24 (Length: 248)
Name: NF10861_low_24
Description: NF10861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10861_low_24 |
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| [»] scaffold1215 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 220; Significance: 1e-121; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 11 - 230
Target Start/End: Original strand, 34473586 - 34473805
Alignment:
| Q |
11 |
cagagaagtggctgaattgaataagttgggatatcctgtagatcgacagataattgagaaatgtactataaagtacaataatttggaaatctttgataac |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34473586 |
cagagaagtggctgaattgaataagttgggatatcctgtagatcgacagataattgagaaatgtactataaagtacaataatttggaaatctttgataac |
34473685 |
T |
|
| Q |
111 |
accatcaggtgcataattttccagaccacaagaagcaatatttttaatgaatgtagataacagtgaacgagttacaatgatattaacttcagatagacat |
210 |
Q |
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| T |
34473686 |
accatcaggtgcataattttccagaccacaagaagcaatatttttaatgaatgtagataacagtgaacgagttacaatgatattaacttcagatagacat |
34473785 |
T |
|
| Q |
211 |
tttaactcatgagcatattt |
230 |
Q |
| |
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|||||||||||||||||||| |
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| T |
34473786 |
tttaactcatgagcatattt |
34473805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 40 - 223
Target Start/End: Complemental strand, 34372972 - 34372789
Alignment:
| Q |
40 |
gatatcctgtagatcgacagataattgagaaatgtactataaagtacaataatttggaaatctttgataacaccatcaggtgcataattttccagaccac |
139 |
Q |
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||||||||||||||| ||||||| ||||||||||||| ||||||||||||||||||||||| || ||||||||||||||||||||||||||| ||||| |
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| T |
34372972 |
gatatcctgtagatccgcagataactgagaaatgtactgtaaagtacaataatttggaaatccatggtaacaccatcaggtgcataattttccataccac |
34372873 |
T |
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| Q |
140 |
aagaagcaatatttttaatgaatgtagataacagtgaacgagttacaatgatattaacttcagatagacattttaactcatgag |
223 |
Q |
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| T |
34372872 |
aagaagcaatatttttattaaatgtagagaacaatgaataatttacaatgatcttaatttcagatagacattttcactcatgag |
34372789 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 40 - 210
Target Start/End: Original strand, 27625781 - 27625951
Alignment:
| Q |
40 |
gatatcctgtagatcgacagataattgagaaatgtactataaagtacaataatttggaaatctttgataacaccatcaggtgcataattttccagaccac |
139 |
Q |
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|||||| |||||||| ||| |||||||||||||||| |||||||||||||||||||||||||| || ||||||||| |||| |||||||||||| || || |
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| T |
27625781 |
gatatcatgtagatccacaaataattgagaaatgtaatataaagtacaataatttggaaatctatggtaacaccattaggtacataattttccatacgac |
27625880 |
T |
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| Q |
140 |
aagaagcaatatttttaatgaatgtagataacagtgaacgagttacaatgatattaacttcagatagacat |
210 |
Q |
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| T |
27625881 |
aagaaacaatatttttattaaatgtagagaacaatgaatgagtaacaatgacattaaattcagatagacat |
27625951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 40 - 210
Target Start/End: Original strand, 34511554 - 34511724
Alignment:
| Q |
40 |
gatatcctgtagatcgacagataattgagaaatgtactataaagtacaataatttggaaatctttgataacaccatcaggtgcataattttccagaccac |
139 |
Q |
| |
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|||||| |||||||| ||| |||||||||||||||| |||||||||||||||||||||||||| || || |||||| |||| |||||||||||| || || |
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| T |
34511554 |
gatatcatgtagatccacaaataattgagaaatgtaatataaagtacaataatttggaaatctatggtagcaccattaggtacataattttccatacgac |
34511653 |
T |
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| Q |
140 |
aagaagcaatatttttaatgaatgtagataacagtgaacgagttacaatgatattaacttcagatagacat |
210 |
Q |
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||||| ||||||||||| | |||||||| |||| |||| |||| ||||||| ||||| ||||||||||||| |
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| T |
34511654 |
aagaaacaatatttttattaaatgtagagaacaatgaatgagtaacaatgacattaaattcagatagacat |
34511724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 40 - 227
Target Start/End: Original strand, 34467610 - 34467797
Alignment:
| Q |
40 |
gatatcctgtagatcgacagataattgagaaatgtactataaagtacaataatttggaaatctttgataacaccatcaggtgcataattttccagaccac |
139 |
Q |
| |
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|||||| |||||||| ||| ||| |||||||||||| |||||||||||||||| ||||||||| || ||||||||| |||| || |||||||| ||||| |
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| T |
34467610 |
gatatcatgtagatccacaaatagttgagaaatgtaatataaagtacaataatctggaaatctatggtaacaccattaggtatatgattttccataccac |
34467709 |
T |
|
| Q |
140 |
aagaagcaatatttttaatgaatgtagataacagtgaacgagttacaatgatattaacttcagatagacattttaactcatgagcata |
227 |
Q |
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| T |
34467710 |
aagaaacaatatttttattaaatgtagagaacaatgaatgagtaacaacgatattaaattcagataggcattttccctcatgagcata |
34467797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 48 - 156
Target Start/End: Original strand, 34477572 - 34477680
Alignment:
| Q |
48 |
gtagatcgacagataattgagaaatgtactataaagtacaataatttggaaatctttgataacaccatcaggtgcataattttccagaccacaagaagca |
147 |
Q |
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||||||| ||||||||||||||||||||||| ||||| |||||||||||||||| || |||||||||| ||| |||||||||| | ||||||||||||| |
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| T |
34477572 |
gtagatccacagataattgagaaatgtactaaaaagtccaataatttggaaatcaatggtaacaccatctggtacataattttcaataccacaagaagca |
34477671 |
T |
|
| Q |
148 |
atattttta |
156 |
Q |
| |
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||| ||||| |
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| T |
34477672 |
ataatttta |
34477680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1215 (Bit Score: 108; Significance: 2e-54; HSPs: 1)
Name: scaffold1215
Description:
Target: scaffold1215; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 40 - 223
Target Start/End: Original strand, 341 - 524
Alignment:
| Q |
40 |
gatatcctgtagatcgacagataattgagaaatgtactataaagtacaataatttggaaatctttgataacaccatcaggtgcataattttccagaccac |
139 |
Q |
| |
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|||||| |||||||| ||||||| ||||||||||| | |||||||||||||||||||||||| || || |||||||||||||||||||||||||||||| |
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| T |
341 |
gatatcttgtagatctgcagataactgagaaatgtattgtaaagtacaataatttggaaatctatggtatcaccatcaggtgcataattttccagaccac |
440 |
T |
|
| Q |
140 |
aagaagcaatatttttaatgaatgtagataacagtgaacgagttacaatgatattaacttcagatagacattttaactcatgag |
223 |
Q |
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||||||||||||||||| | |||| ||| |||| || | |||||||||| |||||||||||||||||| ||||| ||||||||| |
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| T |
441 |
aagaagcaatatttttattaaatgcagagaacaatggatgagttacaataatattaacttcagatagatattttcactcatgag |
524 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 108; Significance: 2e-54; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 40 - 223
Target Start/End: Original strand, 10526347 - 10526530
Alignment:
| Q |
40 |
gatatcctgtagatcgacagataattgagaaatgtactataaagtacaataatttggaaatctttgataacaccatcaggtgcataattttccagaccac |
139 |
Q |
| |
|
|||||| |||||||| ||||||| ||||||||||| | |||||||||||||||||||||||| || || |||||||||||||||||||||||||||||| |
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| T |
10526347 |
gatatcttgtagatctgcagataactgagaaatgtattgtaaagtacaataatttggaaatctatggtatcaccatcaggtgcataattttccagaccac |
10526446 |
T |
|
| Q |
140 |
aagaagcaatatttttaatgaatgtagataacagtgaacgagttacaatgatattaacttcagatagacattttaactcatgag |
223 |
Q |
| |
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| T |
10526447 |
aagaagcaatatttttattaaatgcagagaacaatggatgagttacaataatattaacttcagatagatattttcactcatgag |
10526530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 40 - 223
Target Start/End: Original strand, 10533169 - 10533339
Alignment:
| Q |
40 |
gatatcctgtagatcgacagataattgagaaatgtactataaagtacaataatttggaaatctttgataacaccatcaggtgcataattttccagaccac |
139 |
Q |
| |
|
|||||| |||||||| ||||||| |||||||||||| |||||||||||||||||||||||| | |||| ||||||||||| |||||||||| ||||| |
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| T |
10533169 |
gatatcttgtagatccgcagataaccgagaaatgtactgtaaagtacaataatttggaaatctatcgtaacgccatcaggtgcctaattttccataccac |
10533268 |
T |
|
| Q |
140 |
aagaagcaatatttttaatgaatgtagataacagtgaacgagttacaatgatattaacttcagatagacattttaactcatgag |
223 |
Q |
| |
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||||||||||||||||| | |||| | ||||||||||||||||||||||||||||||||||| |||| |||| |
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| T |
10533269 |
aagaagcaatatttttattaaatgca-------------gagttacaatgatattaacttcagatagacattttcactcgtgag |
10533339 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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