View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10861_low_26 (Length: 241)
Name: NF10861_low_26
Description: NF10861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10861_low_26 |
 | |
|
| [»] chr8 (4 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 218; Significance: 1e-120; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 24064321 - 24064078
Alignment:
| Q |
1 |
caactgctatgagcctttttgctttctgttactgtgctcatgctttgatgccaacaatatgcaattctatgaatgatagaaagcagttttccaaggttag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24064321 |
caactgctatgagcctttttgctttctgttactgtgctcatgctttgatgccaacaatatgcaattctatgaatgatagaaagcagttttccaaggttag |
24064222 |
T |
|
| Q |
101 |
tatagtccttgaattcttaaaattggagtaaattaccaatttaatcattgaaattatgggattgtgtgatttaatccctaaaattgataatca---tcat |
197 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| |||| |
|
|
| T |
24064221 |
tatagtccttgaattcttaaaattggagtaaattaccaatttaatcattgaaattataggattgagtgatttaatccctaaaattgataatcatcatcat |
24064122 |
T |
|
| Q |
198 |
tcacatcaattatttgagttcaaatcttggtgaaacaatctttg |
241 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
24064121 |
tcacatcaattctttgagttcaaatcttggtgaaacaatctttg |
24064078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 24016838 - 24016737
Alignment:
| Q |
1 |
caactgctatgagcctttttgctttctgttactgtgctcatgctttgatgccaacaatatgcaattctatgaatgatagaaagcagttttccaaggttag |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||| ||||||| |||||||||||||| |||||||| |||||||||||||| ||||| || |
|
|
| T |
24016838 |
caactgctatgagcctttttgctttctgttattgtgctcatgcactgatgcccacaatatgcaattccatgaatgacagaaagcagttttctaaggtaag |
24016739 |
T |
|
| Q |
101 |
ta |
102 |
Q |
| |
|
|| |
|
|
| T |
24016738 |
ta |
24016737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 24074776 - 24074680
Alignment:
| Q |
1 |
caactgctatgagcctttttgctttctgttactgtgctcatgctttgatgccaacaatatgcaattctatgaatgatagaaagcagttttccaaggt |
97 |
Q |
| |
|
||||||| |||||||||||||||||| ||||||||||||||| || ||||||||| ||| ||||| ||||||||||||||||||||||| ||||| |
|
|
| T |
24074776 |
caactgcaatgagcctttttgctttcagttactgtgctcatggattaatgccaacattatctaattccatgaatgatagaaagcagttttcaaaggt |
24074680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 97
Target Start/End: Complemental strand, 23246151 - 23246061
Alignment:
| Q |
7 |
ctatgagcctttttgctttctgttactgtgctcatgctttgatgccaacaatatgcaattctatgaatgatagaaagcagttttccaaggt |
97 |
Q |
| |
|
||||||||||||||||||| |||||| || |||||| || | || |||||| ||||||| |||| ||| ||||| || ||||||||||| |
|
|
| T |
23246151 |
ctatgagcctttttgctttttgttacaatgttcatgcattacttcccacaatacgcaattccatgagtgaaagaaaacaattttccaaggt |
23246061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University