View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10861_low_3 (Length: 426)
Name: NF10861_low_3
Description: NF10861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10861_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 329; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 6 - 378
Target Start/End: Original strand, 10036525 - 10036898
Alignment:
| Q |
6 |
atcaagctcgtgtggtcagaagtcagaaccagatgtttgaagnnnnnnncgt-gattatttcattaaaaataagataatcaaacatgcaagtgtttcgat |
104 |
Q |
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| T |
10036525 |
atcaagctcgtgtggtcagaagtcagaaccaaatgtttgaagaaaaaaacattgattatttcattaaaaataagataatcaaacatgcaagtgtttcgat |
10036624 |
T |
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| Q |
105 |
tcaattttggctttgacttctttacctcaggtcctcacttcaatccactcaagaaggatcacggagctcctaccgatgatgagcgacatgccggtgattt |
204 |
Q |
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| T |
10036625 |
tcaattttggctttgacttctttacctcaggtcctcacttcaatccactcaagaaggatcacggagctcctaccgatgatgagcgacatgccggtgattt |
10036724 |
T |
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| Q |
205 |
gggtaacattgttgcaggccctgatggtattacattctttcttcttcgtcttttttatatatttattttgagattttaacaatgtataagttgtcccccg |
304 |
Q |
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| T |
10036725 |
gggtaacattgttgcaggccctgatggtattacattctttcttcttcgtcttttttatatatttattttgagattttaacaatgtataagttgtcccctg |
10036824 |
T |
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| Q |
305 |
ggaaatctccttgagagttttctgttttgcaggagttgctgagatttctatcagagatggaaaggtacagaact |
378 |
Q |
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| T |
10036825 |
ggaaatctccttgagagttttctgttttgcaggagttgctgagatttctatcagagatggaaaggtaaagaact |
10036898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 376 - 416
Target Start/End: Original strand, 10037076 - 10037116
Alignment:
| Q |
376 |
actatataacatagcgaaatttgaacaatcgctattattct |
416 |
Q |
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| T |
10037076 |
actatataacataacgaaatttgaacaatcgctattattct |
10037116 |
T |
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