View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10861_low_31 (Length: 209)
Name: NF10861_low_31
Description: NF10861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10861_low_31 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 161; Significance: 5e-86; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 15 - 191
Target Start/End: Complemental strand, 42936709 - 42936533
Alignment:
| Q |
15 |
cacagaccactgttgcctttatctttgatcgttacttgacagatcacttaattattttggccaaacagatcacaatttaaaagagtggtaatttatttta |
114 |
Q |
| |
|
|||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42936709 |
cacacaccactgttgcctttatcttcgatcgttacttgacagatcacttaattattttggtcaaacagatcacaatttaaaagagtggtaatttatttta |
42936610 |
T |
|
| Q |
115 |
caggattaaagagcggtaacgtttagtttgacatttcttaatctaaaaaagatttgacatttttctctcttactggt |
191 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
42936609 |
caggattaaagagcggtaacgtttagtttgacatttcttaatctaaataagatttgacatttttctctcttactggt |
42936533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University