View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10861_low_5 (Length: 399)

Name: NF10861_low_5
Description: NF10861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10861_low_5
NF10861_low_5
[»] chr3 (14 HSPs)
chr3 (18-389)||(6526289-6526660)
chr3 (18-345)||(6847908-6848240)
chr3 (18-246)||(6557680-6557906)
chr3 (18-186)||(6788539-6788709)
chr3 (18-101)||(6549319-6549402)
chr3 (341-389)||(6843067-6843115)
chr3 (285-361)||(6549100-6549181)
chr3 (285-347)||(6785444-6785506)
chr3 (299-351)||(6451740-6451792)
chr3 (285-333)||(6788422-6788471)
chr3 (285-352)||(6934798-6934865)
chr3 (285-335)||(8466819-8466869)
chr3 (125-158)||(6549286-6549319)
chr3 (180-252)||(6549223-6549295)
[»] scaffold0425 (1 HSPs)
scaffold0425 (18-229)||(11156-11367)


Alignment Details
Target: chr3 (Bit Score: 294; Significance: 1e-165; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 18 - 389
Target Start/End: Complemental strand, 6526660 - 6526289
Alignment:
Q  18 atacaaaccatgaacaaattggaatggatggaattcaaacaatgtcagcctcttcccttgcccgcacatgatcacgaggctctacgtcgggtctaaatca 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||    
T  6526660 atacaaaccatgaacaaattggaatggatggaattcaaacaatgtcagcctcttcccttgcccacacatgatcacgaggctctacgtcgagtctaaatca 6526561  T
Q  118 tctttggatgaaagaaacaaaaaccaaaatttctttgttgcgaatttgtgtgccctgctacctcttttttatagcaagaacaatgccttatcaatctaaa 217  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  6526560 tctttggatgaaagaaacaaaaaccaaaatttctttgttgcgaaattgtgtgccctgctacctcttttttatagcaagaacaatgccttatctatctaaa 6526461  T
Q  218 ccatgtattgaacagaaagtaagtagattttaaattaaagtaagcctgttctgaatgnnnnnnnnnctttctaatttccaattttcatctactcagttaa 317  Q
    ||||||| |||||||||||| || |||||||||||||||||||||||||| ||||||         |||| |||||||||||||||||||||||||||||    
T  6526460 ccatgtactgaacagaaagt-agcagattttaaattaaagtaagcctgttatgaatgtttttttttctttttaatttccaattttcatctactcagttaa 6526362  T
Q  318 gtgtagcctaagaatgctgagagcacttaccattgtaagtaatatctttgaaaggt-acatgttatgcctttg 389  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  6526361 gtgtaacctaagaatgctgagagcacttaccattgtaagtaatatctttgaaaggtaacatgttatgcctttg 6526289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 18 - 345
Target Start/End: Complemental strand, 6848240 - 6847908
Alignment:
Q  18 atacaaaccatgaacaaattggaatggatggaattcaaacaatgtcagcctcttcccttgcccgcacatgatcacgaggctctacgtcgggtctaaatca 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  6848240 atacaaaccatgaacaaattggaatggatggaattcaaacaatgtcagcctcttcccttgcccgcacatgatcacgaggctctacgtcgagtctaaatca 6848141  T
Q  118 tctttggatgaaagaaacaaaaaccaaaatttctttgttgcgaatttgtgtgccctgctacctcttttttatagcaagaacaatgccttatcaatctaaa 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  6848140 tctttggatgaaagaaacaaaaaccaaaatttctttgttgcgaatttgggtgccctgctacctcttttttatagcaagaacaatgccttatctatctaaa 6848041  T
Q  218 ccatgtattgaacagaaagtaagtagattttaaattaaagtaagcctgttctgaatg-----nnnnnnnnnctttctaatttccaattttcatctactca 312  Q
    ||||||||| ||||||||||||| |||||||||||||| | ||| ||||| ||||||              |||||||||||||||||||||| ||||||    
T  6848040 ccatgtatttaacagaaagtaagcagattttaaattaatgaaagtctgttatgaatgttttctttttttttctttctaatttccaattttcatatactca 6847941  T
Q  313 gttaagtgtagcctaagaatgctgagagcactt 345  Q
    |||||||||||||||||||||||||||||||||    
T  6847940 gttaagtgtagcctaagaatgctgagagcactt 6847908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 18 - 246
Target Start/End: Complemental strand, 6557906 - 6557680
Alignment:
Q  18 atacaaaccatgaacaaattggaatggatggaattcaaacaatgtcagcctcttcccttgcccgcacatgatcacgaggctctacgtcgggtctaaatca 117  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||  || |||||||||| |||||||||  |||  || ||||||    
T  6557906 atacaaaccatgaacaaattggaatggatggaattcacacaatgtcagactcttccctt--ccacacatgatcatgaggctctatctcgaatccaaatca 6557809  T
Q  118 tctttggatgaaagaaacaaaaaccaaaatttctttgttgcgaatttgtgtgccctgctacctcttttttatagcaagaacaatgccttatcaatctaaa 217  Q
    || |||||||||||||||| ||||  ||||||||||||||||||| ||||||||||||||||||||||||  ||||||||||| |||||||| | |||||    
T  6557808 tcgttggatgaaagaaacataaactgaaatttctttgttgcgaatgtgtgtgccctgctacctcttttttgcagcaagaacaaagccttatctacctaaa 6557709  T
Q  218 ccatgtattgaacagaaagtaagtagatt 246  Q
    ||||||||  ||||||||||||| |||||    
T  6557708 ccatgtatgaaacagaaagtaagcagatt 6557680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 18 - 186
Target Start/End: Complemental strand, 6788709 - 6788539
Alignment:
Q  18 atacaaaccatgaacaaattggaatggatggaattcaaacaatgtcagcctcttcccttgccc-gcacatgatcacgaggctctacgtcgggtctaaatc 116  Q
    ||||||||||||||||||| | |||||||| |||||| |||||||||||||||||||||||||    || ||||| ||| ||||| || |  || ||| |    
T  6788709 atacaaaccatgaacaaatcgcaatggatgaaattcacacaatgtcagcctcttcccttgcccatgtcaagatcatgagactctatgttgaatccaaaac 6788610  T
Q  117 atctttggatgaaagaaacaaaaaccaaaa-tttctttgttgcgaatttgtgtgccctgctacctcttttt 186  Q
    | |||||||||||||||||||| ||||||| |||||||||||||||| ||  |||| |||||| |||||||    
T  6788609 acctttggatgaaagaaacaaagaccaaaattttctttgttgcgaatgtgcatgccatgctacatcttttt 6788539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 18 - 101
Target Start/End: Complemental strand, 6549402 - 6549319
Alignment:
Q  18 atacaaaccatgaacaaattggaatggatggaattcaaacaatgtcagcctcttcccttgcccgcacatgatcacgaggctcta 101  Q
    |||||||||||| |||||||||||| |||||||| || ||||| |||||||| |||||||||  ||||||||||||||||||||    
T  6549402 atacaaaccatgtacaaattggaatagatggaatccacacaatttcagcctcatcccttgcctccacatgatcacgaggctcta 6549319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 341 - 389
Target Start/End: Complemental strand, 6843115 - 6843067
Alignment:
Q  341 cacttaccattgtaagtaatatctttgaaaggtacatgttatgcctttg 389  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  6843115 cacttaccattgtaagtaatatctttgaaaggtacatgttatgcctttg 6843067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 285 - 361
Target Start/End: Complemental strand, 6549181 - 6549100
Alignment:
Q  285 tttctaatttccaattttcatctactcagttaagtgtagcct-----aagaatgctgagagcacttaccattgtaagtaata 361  Q
    |||||||||||||||||| |||||| ||||||||||||||||     |||||||| |||||||||||||||| |||||||||    
T  6549181 tttctaatttccaattttgatctacgcagttaagtgtagcctaagataagaatgcagagagcacttaccattataagtaata 6549100  T

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Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 285 - 347
Target Start/End: Complemental strand, 6785506 - 6785444
Alignment:
Q  285 tttctaatttccaattttcatctactcagttaagtgtagcctaagaatgctgagagcacttac 347  Q
    |||| ||||||||||||||||||||||| ||||||||||| ||||||| || ||| |||||||    
T  6785506 tttcaaatttccaattttcatctactcaattaagtgtagcataagaattctaagatcacttac 6785444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 299 - 351
Target Start/End: Complemental strand, 6451792 - 6451740
Alignment:
Q  299 ttttcatctactcagttaagtgtagcctaagaatgctgagagcacttaccatt 351  Q
    ||||||||||||||||||||| ||| |||||||| ||||||| ||||||||||    
T  6451792 ttttcatctactcagttaagtttaggctaagaattctgagagaacttaccatt 6451740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 285 - 333
Target Start/End: Complemental strand, 6788471 - 6788422
Alignment:
Q  285 tttctaatttccaattt-tcatctactcagttaagtgtagcctaagaatg 333  Q
    ||||||||||||||||| | ||||||||||||||||||||||||| ||||    
T  6788471 tttctaatttccaatttattatctactcagttaagtgtagcctaacaatg 6788422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 285 - 352
Target Start/End: Original strand, 6934798 - 6934865
Alignment:
Q  285 tttctaatttccaattttcatctactcagttaagtgtagcctaagaatgctgagagcacttaccattg 352  Q
    ||||||||||||  |||||||||||||| | |||||| |||||||||| ||   ||||||||||||||    
T  6934798 tttctaatttcctgttttcatctactcaatgaagtgtggcctaagaatactattagcacttaccattg 6934865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 285 - 335
Target Start/End: Original strand, 8466819 - 8466869
Alignment:
Q  285 tttctaatttccaattttcatctactcagttaagtgtagcctaagaatgct 335  Q
    ||||| ||||||| |||||||||||||| |||| |||||||||||| ||||    
T  8466819 tttctgatttccagttttcatctactcaattaaatgtagcctaagagtgct 8466869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 158
Target Start/End: Complemental strand, 6549319 - 6549286
Alignment:
Q  125 atgaaagaaacaaaaaccaaaatttctttgttgc 158  Q
    ||||||||||||||||||||||||||||| ||||    
T  6549319 atgaaagaaacaaaaaccaaaatttcttttttgc 6549286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 180 - 252
Target Start/End: Complemental strand, 6549295 - 6549223
Alignment:
Q  180 tcttttttatagcaagaacaatgccttatcaatctaaaccatgtattgaacagaaagtaagtagattttaaat 252  Q
    ||||||||  |||||||||| || |||||| | ||||||||||||   ||||||||||||| ||||| |||||    
T  6549295 tcttttttgcagcaagaacactgtcttatctacctaaaccatgtacgaaacagaaagtaagcagattgtaaat 6549223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0425 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: scaffold0425
Description:

Target: scaffold0425; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 18 - 229
Target Start/End: Complemental strand, 11367 - 11156
Alignment:
Q  18 atacaaaccatgaacaaattggaatggatggaattcaaacaatgtcagcctcttcccttgcccgcacatgatcacgaggctctacgtcgggtctaaatca 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  11367 atacaaaccatgaacaaattggaatggatggaattcaaacaatgtcagcctcttcccttgcccgcacatgatcacgaggctctacgtcgagtctaaatca 11268  T
Q  118 tctttggatgaaagaaacaaaaaccaaaatttctttgttgcgaatttgtgtgccctgctacctcttttttatagcaagaacaatgccttatcaatctaaa 217  Q
    ||||||| |||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  11267 tctttggctgaaagaaacaaaaaccaaaatttctctgttgcaaatttgtgtgccctgctacctcttttttatagcaagaacaatgccttatctatctaaa 11168  T
Q  218 ccatgtattgaa 229  Q
    ||||||||||||    
T  11167 ccatgtattgaa 11156  T

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