View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10861_low_6 (Length: 392)
Name: NF10861_low_6
Description: NF10861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10861_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 19 - 381
Target Start/End: Original strand, 49624474 - 49624836
Alignment:
| Q |
19 |
aaaggtacgtagctgagggactaaaaaagagaagagagcatcttttattcttttcagaacatatctttgcatcaaattaatcataagagagagtactgaa |
118 |
Q |
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| T |
49624474 |
aaaggtacgtcgctgagggactaaaaaagagaagagagcatcttttattcttttcagaacatatctttgcatcaaattaatcataagagagagtactgaa |
49624573 |
T |
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| Q |
119 |
ggaacacattaacactaatattattaaaatcgttgatactcnnnnnnngtacatgggctagctagctagatacatagctaactgccgagatactacacta |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49624574 |
ggaacacattaacactaatattattaaaatcgttgatactcaaaaaaagtacatgggctagctagctagatacatagctaactgccgagatactacacta |
49624673 |
T |
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| Q |
219 |
atcagcgccaaccataatcaaaatcaaaatattccaacctaaagattcctagctagctagctggatacaagaaaatcaaaagaaaaacgaaagtaaacat |
318 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49624674 |
atcagcgccaaccatactcaaaatcaaaatattccaacctaaagattcctagctagctagctggatacaagaaaatcaaaagaaaaacgaaagtaaacat |
49624773 |
T |
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| Q |
319 |
tgatagagaccaaaaataagtaactatctctaggaaatattatagcctctctcaattatctct |
381 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49624774 |
tgatagagaccaaaaataagtaactatctctaggaaatattatagcctctctcaattatctct |
49624836 |
T |
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