View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10861_low_7 (Length: 392)
Name: NF10861_low_7
Description: NF10861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10861_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 22 - 382
Target Start/End: Complemental strand, 3923211 - 3922851
Alignment:
| Q |
22 |
aaggacaagaaccagtgttgacagccgtgaaccaagatggaatgagcaatatgtttgggaagtttatgagccattcacagtcattactattggagttttt |
121 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3923211 |
aaggacaagaacaagtgttgacagccgtgaaccaagatggaatgagcaatatgtttgggaagtttatgagccattcacagtcattactattggagttttt |
3923112 |
T |
|
| Q |
122 |
gataacaatcagttagatcctgaaagtagagccagaggtgcaagagatactataatggctaagataaggattcgtctatcaacacttgaaaacggcaaag |
221 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3923111 |
gataacaatcagttagatcctgaaagtagagccagaggtgcaagagatactataatggctaagataaggattcgtctatcaacacttgaaaacggcaaag |
3923012 |
T |
|
| Q |
222 |
tgtatgcacattcttaccctcttataggtttacatccctctggtgtaactaagatgggtgaaatccatttggcagtgaagtttacttggacatctcagtc |
321 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3923011 |
tgtatgcacattcttaccctcttataggtttacatccctctggtgtaactaagatgggtgaaatccatttggcagtgaagtttacttggacatctcagtc |
3922912 |
T |
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| Q |
322 |
tacatttacttttccatttgagtctatatttaataagtgtgcattatacggcagacctttg |
382 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3922911 |
tacatttacttttccatttgagtctatatttaataagtgtgcattatacggcagacctttg |
3922851 |
T |
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