View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10861_low_8 (Length: 341)
Name: NF10861_low_8
Description: NF10861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10861_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 296; Significance: 1e-166; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 1 - 331
Target Start/End: Complemental strand, 37209379 - 37209051
Alignment:
| Q |
1 |
tcattcttgcctgactttgtttctcggcatattatcttttcagccaatcacacagaaccctcttatgggttcctctcctctaacgttagtgaagatgggt |
100 |
Q |
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| T |
37209379 |
tcatttttgcctggctttgtttctcggcatattatcttttcagccaatcacacataaccctcttatgggttcctctcctctaacgttagtgaagatgggt |
37209280 |
T |
|
| Q |
101 |
gctatgtacttccaaaaatctgatagattacaccacgcttaccgcctcttcacctgtttgtggctgcatgcaggggtcatagacttactgctcaacatgc |
200 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37209279 |
gctatgtacttccagaaatctgatagattacaccacgcttaccgcctcttcacctgtttgtggctgcatgcaggggtcatagacttactgctcaacatgc |
37209180 |
T |
|
| Q |
201 |
tcaatattttctactaccacatatatatcttgagaagaaatttggatatattcgaattgcaatattgcacaccatgtctggtatgggaagcaatttattt |
300 |
Q |
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| T |
37209179 |
tcaatattttgtactactac--atatatcttgagaagaaatttggatatattcgaattgcaatattgcacaccatgtctggtatgggaagcaatttattt |
37209082 |
T |
|
| Q |
301 |
tctgctttatgcataccaacaagtgtctctg |
331 |
Q |
| |
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| T |
37209081 |
tctgctttatgcataccaacaagtgtctctg |
37209051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 1 - 142
Target Start/End: Complemental strand, 37206767 - 37206626
Alignment:
| Q |
1 |
tcattcttgcctgactttgtttctcggcatattatcttttcagccaatcacacagaaccctcttatgggttcctctcctctaacgttagtgaagatgggt |
100 |
Q |
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||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
37206767 |
tcattcttgcctggcttcgtttctcggcatattatcttttcagccaatcacacagaaccctcttctgggttcctctcctctaacgttagtgaagatgggt |
37206668 |
T |
|
| Q |
101 |
gctatgtacttccaaaaatctgatagattacaccacgcttac |
142 |
Q |
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| T |
37206667 |
actatgtacttcaagaaatctgatcgattacaccacgcttac |
37206626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 184 - 331
Target Start/End: Complemental strand, 37206630 - 37206485
Alignment:
| Q |
184 |
cttactgctcaacatgctcaatattttctactaccacatatatatcttgagaagaaatttggatatattcgaattgcaatattgcacaccatgtctggta |
283 |
Q |
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|||||||| ||||||| |||||||| | |||||| |||||||| | ||||||||||||||||||| ||||||||| ||||||||||||||||||||||| |
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| T |
37206630 |
cttactgcccaacatgttcaatattctgtactacgacatatattt--tgagaagaaatttggatatgttcgaattgaaatattgcacaccatgtctggta |
37206533 |
T |
|
| Q |
284 |
tgggaagcaatttattttctgctttatgcataccaacaagtgtctctg |
331 |
Q |
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| T |
37206532 |
tgggaagcagtttattttctgctttattcataccaacaagtgtctctg |
37206485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 85 - 176
Target Start/End: Original strand, 13003009 - 13003100
Alignment:
| Q |
85 |
gttagtgaagatgggtgctatgtacttccaaaaatctgatagattacaccacgcttaccgcctcttcacctgtttgtggctgcatgcagggg |
176 |
Q |
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| T |
13003009 |
gttagtgaagatgggtgccatgtacttcaccaaatcagatcgattacagcacatttaccgccttttcacctctttatggcttcatgcagggg |
13003100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 255 - 310
Target Start/End: Original strand, 13005578 - 13005633
Alignment:
| Q |
255 |
aattgcaatattgcacaccatgtctggtatgggaagcaatttattttctgctttat |
310 |
Q |
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| T |
13005578 |
aattgcaatattgcacaacatttctggtataggaggcagtttattttctgctttat |
13005633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 269 - 330
Target Start/End: Complemental strand, 13231666 - 13231605
Alignment:
| Q |
269 |
acaccatgtctggtatgggaagcaatttattttctgctttatgcataccaacaagtgtctct |
330 |
Q |
| |
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|||| |||||| || ||||||||||||| |||||||||||| ||||||| ||||||||||| |
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| T |
13231666 |
acacgatgtctagtttgggaagcaatttgatttctgctttattcataccatcaagtgtctct |
13231605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 97; Significance: 1e-47; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 20 - 184
Target Start/End: Complemental strand, 292693 - 292530
Alignment:
| Q |
20 |
tttctcggcatattatcttttcagccaatcacacagaaccctcttatgggttcctctcctctaacgttagtgaagatgggtgctatgtacttccaaaaat |
119 |
Q |
| |
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|||||| ||| ||||||||| |||||||||| |||||||||| |||||||||||||||||||||| | | |||||||||||| |||||||||| | |||| |
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| T |
292693 |
tttctcagcagattatctttccagccaatcaaacagaaccct-ttatgggttcctctcctctaacatcaatgaagatgggtgatatgtacttcaagaaat |
292595 |
T |
|
| Q |
120 |
ctgatagattacaccacgcttaccgcctcttcacctgtttgtggctgcatgcaggggtcatagac |
184 |
Q |
| |
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| ||| |||||||||||||||||||||||||||||| |||||||||||||| |||| |||||||| |
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| T |
292594 |
ccgatcgattacaccacgcttaccgcctcttcacctatttgtggctgcatgtagggttcatagac |
292530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 176 - 328
Target Start/End: Complemental strand, 291957 - 291807
Alignment:
| Q |
176 |
gtcatagacttactgctcaacatgctcaatattttctactaccacatatatatcttgagaagaaatttggatatattcgaattgcaatattgcacaccat |
275 |
Q |
| |
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|||||||||||||||||||||||| |||||||| | ||||||||||||||| ||||||||||||||||||||| || ||| || ||||||| ||||||| |
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| T |
291957 |
gtcatagacttactgctcaacatgttcaatattatgtactaccacatatat--cttgagaagaaatttggatatgtttgaaatgaaatattgtacaccat |
291860 |
T |
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| Q |
276 |
gtctggtatgggaagcaatttattttctgctttatgcataccaacaagtgtct |
328 |
Q |
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|| || |||||||| || ||||||||||||||||| ||||||| ||||||||| |
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| T |
291859 |
gtttgatatgggaaacagtttattttctgctttattcataccagcaagtgtct |
291807 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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