View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10861_low_9 (Length: 335)
Name: NF10861_low_9
Description: NF10861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10861_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 93; Significance: 3e-45; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 94 - 186
Target Start/End: Original strand, 21065457 - 21065549
Alignment:
| Q |
94 |
acagaccagcagctttctctaccaatactgcatagaaagataatgttcactgaaaaggtaatacataaatctgaagaagcttctttagtcatc |
186 |
Q |
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| T |
21065457 |
acagaccagcagctttctctaccaatactgcatagaaagataatgttcactgaaaaggtaatacataaatctgaagaagcttctttagtcatc |
21065549 |
T |
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Target: chr5; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 246 - 316
Target Start/End: Original strand, 21065609 - 21065679
Alignment:
| Q |
246 |
actaggttaaagaatctgatgaagctagacatcttgtatcacacaaggagaaagattcccttcctgctggt |
316 |
Q |
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| T |
21065609 |
actaggttaaagaatctgatgaagctagacatcttgtatcacataagaggaaagattcccttcctgctggt |
21065679 |
T |
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