View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10862_high_10 (Length: 356)

Name: NF10862_high_10
Description: NF10862
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10862_high_10
NF10862_high_10
[»] chr1 (6 HSPs)
chr1 (19-293)||(8813440-8813714)
chr1 (134-324)||(235886-236076)
chr1 (167-319)||(229858-230010)
chr1 (142-275)||(250568-250701)
chr1 (137-249)||(4440661-4440773)
chr1 (311-346)||(8813717-8813752)
[»] chr3 (14 HSPs)
chr3 (132-301)||(9341533-9341699)
chr3 (160-260)||(9403059-9403159)
chr3 (188-294)||(9370461-9370567)
chr3 (160-260)||(9421298-9421398)
chr3 (190-263)||(9348838-9348911)
chr3 (136-303)||(9344639-9344803)
chr3 (167-304)||(9494028-9494165)
chr3 (133-240)||(9625696-9625803)
chr3 (173-245)||(9433723-9433795)
chr3 (122-238)||(9645575-9645691)
chr3 (136-240)||(9654582-9654686)
chr3 (133-303)||(9449095-9449259)
chr3 (160-221)||(9441015-9441076)
chr3 (133-290)||(9613061-9613218)
[»] chr2 (1 HSPs)
chr2 (140-263)||(20693476-20693599)
[»] chr5 (1 HSPs)
chr5 (200-293)||(18571864-18571957)
[»] scaffold0038 (2 HSPs)
scaffold0038 (133-260)||(20300-20427)
scaffold0038 (133-260)||(20444-20571)
[»] chr6 (9 HSPs)
chr6 (133-260)||(28177179-28177306)
chr6 (133-260)||(28219802-28219929)
chr6 (138-228)||(7052957-7053047)
chr6 (133-260)||(28177035-28177162)
chr6 (133-260)||(28219946-28220073)
chr6 (142-228)||(7026618-7026704)
chr6 (158-260)||(28133077-28133179)
chr6 (133-260)||(28132933-28133060)
chr6 (139-228)||(7042334-7042423)
[»] scaffold0455 (1 HSPs)
scaffold0455 (133-260)||(10839-10966)


Alignment Details
Target: chr1 (Bit Score: 263; Significance: 1e-146; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 19 - 293
Target Start/End: Original strand, 8813440 - 8813714
Alignment:
Q  19 tacttatggtgtgtcaaaatgcttaaatgtcgtgtttaagatgactaaataagatcatgaactgtagcaggttatgactgtggctctgattgttcatcca 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  8813440 tacttatggtgtgtcaaaatgcttaaatgtcgtgtttaagatgactaaataagatcatgaaatgtagcaggttatgactgtggctctgattgttcatcca 8813539  T
Q  119 cagccatggaggaggaggcagactggtctgaactgccacaggagcttctgaatctgatatcgcaacaattcgacaacgaaatcgatctcattcgcttccg 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8813540 cagccatggaggaggaggcagactggtctgaactgccacaggagcttctgaatctgatatcgcaacaattcgacaacgaaatcgatctcattcgcttccg 8813639  T
Q  219 atcaatttgtaccaattggcgttcttcttccattccaaatcaccaccgtaacattttaaccatcaaattcccact 293  Q
    |||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  8813640 atcaatttgtaccaattggcattcttcttccatcccaaatcaccaccgtaacattttaaccatcaaattcccact 8813714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 134 - 324
Target Start/End: Complemental strand, 236076 - 235886
Alignment:
Q  134 aggcagactggtctgaactgccacaggagcttctgaatctgatatcgcaacaattcgacaacgaaatcgatctcattcgcttccgatcaatttgtaccaa 233  Q
    ||||||| |||||| |||||||| |||| ||||||||||| |||||  ||||| | ||||||||||||||||||||||||||||||||||||||||||||    
T  236076 aggcagattggtctaaactgccaaaggatcttctgaatcttatatcaaaacaaattgacaacgaaatcgatctcattcgcttccgatcaatttgtaccaa 235977  T
Q  234 ttggcgttcttcttccattccaaatcaccaccgtaacattttaaccatcaaattcccactcatcaaattcccgctcaacattgattccatc 324  Q
    |||||||||||||||||| || |||||||||||| |||| ||||||||||| |||||||||||||||||||| |||||||||| |||||||    
T  235976 ttggcgttcttcttccatcccgaatcaccaccgtgacatgttaaccatcaatttcccactcatcaaattcccactcaacattggttccatc 235886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 167 - 319
Target Start/End: Complemental strand, 230010 - 229858
Alignment:
Q  167 tgaatctgatatcgcaacaattcgacaacgaaatcgatctcattcgcttccgatcaatttgtaccaattggcgttcttcttccattccaaatcaccaccg 266  Q
    ||||||||||||||  || | ||||||||||||||||| ||||||||||||||||||| ||| |||||||||||||||||||||| ||||||||||||||    
T  230010 tgaatctgatatcgtgacgaatcgacaacgaaatcgatatcattcgcttccgatcaatctgttccaattggcgttcttcttccatcccaaatcaccaccg 229911  T
Q  267 taacattttaaccatcaaattcccactcatcaaattcccgctcaacattgatt 319  Q
    | |||| ||||||||||||||||||| | || ||| ||| |||||||||||||    
T  229910 tgacatgttaaccatcaaattcccacccttccaatccccactcaacattgatt 229858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 142 - 275
Target Start/End: Original strand, 250568 - 250701
Alignment:
Q  142 tggtctgaactgccacaggagcttctgaatctgatatcgcaacaattcgacaacgaaatcgatctcattcgcttccgatcaatttgtaccaattggcgtt 241  Q
    ||||||||||| ||| | || ||| |||||||||||||||||| |||||||||| |||||||||||| | ||||||||||||| ||| ||||||||||||    
T  250568 tggtctgaacttccaaacgaccttttgaatctgatatcgcaactattcgacaacaaaatcgatctcaatagcttccgatcaatatgttccaattggcgtt 250667  T
Q  242 cttcttccattccaaatcaccaccgtaacatttt 275  Q
    || ||||||| |||||||| ||||||||||||||    
T  250668 ctgcttccatcccaaatcagcaccgtaacatttt 250701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 137 - 249
Target Start/End: Complemental strand, 4440773 - 4440661
Alignment:
Q  137 cagactggtctgaactgccacaggagcttctgaatctgatatcgcaacaattcgacaacgaaatcgatctcattcgcttccgatcaatttgtaccaattg 236  Q
    |||||||||||  ||| ||| ||||||||||  |||||||||| |||| | |||||   ||| ||||||||||||| |||||||||| |||| |||  ||    
T  4440773 cagactggtcttcactcccaaaggagcttctacatctgatatcccaacgactcgacgttgaactcgatctcattcgtttccgatcaacttgttccacatg 4440674  T
Q  237 gcgttcttcttcc 249  Q
    ||| |||||||||    
T  4440673 gcgctcttcttcc 4440661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 311 - 346
Target Start/End: Original strand, 8813717 - 8813752
Alignment:
Q  311 acattgattccatcacaaataaaactccattctctg 346  Q
    ||||||||||||||||||| ||||||||||||||||    
T  8813717 acattgattccatcacaaacaaaactccattctctg 8813752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 68; Significance: 3e-30; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 132 - 301
Target Start/End: Complemental strand, 9341699 - 9341533
Alignment:
Q  132 ggaggcagactggtctgaactgccacaggagcttctgaatctgatatcgcaacaattcgacaacgaaatcgatctcattcgcttccgatcaatttgtacc 231  Q
    ||||||| |||||||| |||| ||| |||| || || | |||||||||||||| | | |||| |||||||||||||||||| || ||||| |||||| ||    
T  9341699 ggaggcaaactggtctcaactcccaaaggatctactcactctgatatcgcaacgaattgacaccgaaatcgatctcattcgatttcgatccatttgttcc 9341600  T
Q  232 aattggcgttcttcttccattccaaatcaccaccgtaacattttaaccatcaaattcccactcatcaaat 301  Q
    |||||||||||||| ||||| |||||||||||   |||||| ||| || |||||||||||||| ||||||    
T  9341599 aattggcgttcttcctccatcccaaatcacca---taacatcttacccttcaaattcccactcctcaaat 9341533  T

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Target: chr3; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 160 - 260
Target Start/End: Complemental strand, 9403159 - 9403059
Alignment:
Q  160 gagcttctgaatctgatatcgcaacaattcgacaacgaaatcgatctcattcgcttccgatcaatttgtaccaattggcgttcttcttccattccaaatc 259  Q
    ||||||||||||||||||||||||| | ||  || ||||||||||||||||||||| |||||| ||||| |||||||||||||||||||||| | |||||    
T  9403159 gagcttctgaatctgatatcgcaacgaatcaccaccgaaatcgatctcattcgctttcgatcagtttgttccaattggcgttcttcttccatccgaaatc 9403060  T
Q  260 a 260  Q
    |    
T  9403059 a 9403059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 188 - 294
Target Start/End: Complemental strand, 9370567 - 9370461
Alignment:
Q  188 tcgacaacgaaatcgatctcattcgcttccgatcaatttgtaccaattggcgttcttcttccattccaaatcaccaccgtaacattttaaccatcaaatt 287  Q
    ||||||||||||||||||||||||| || |||||||||||| |||||||||| ||||| ||||||||||||||||| | | | | || | ||||||||||    
T  9370567 tcgacaacgaaatcgatctcattcgttttcgatcaatttgttccaattggcgctcttcctccattccaaatcaccatcttcaaacttcacccatcaaatt 9370468  T
Q  288 cccactc 294  Q
    |||||||    
T  9370467 cccactc 9370461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 160 - 260
Target Start/End: Complemental strand, 9421398 - 9421298
Alignment:
Q  160 gagcttctgaatctgatatcgcaacaattcgacaacgaaatcgatctcattcgcttccgatcaatttgtaccaattggcgttcttcttccattccaaatc 259  Q
    ||||||||||||||||||||||||| | ||  || ||||||||||||||||||||| |||||| ||||| ||||||||||||| |||||||| | |||||    
T  9421398 gagcttctgaatctgatatcgcaacgaatcaccaccgaaatcgatctcattcgctttcgatcagtttgttccaattggcgttcatcttccatccgaaatc 9421299  T
Q  260 a 260  Q
    |    
T  9421298 a 9421298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 190 - 263
Target Start/End: Complemental strand, 9348911 - 9348838
Alignment:
Q  190 gacaacgaaatcgatctcattcgcttccgatcaatttgtaccaattggcgttcttcttccattccaaatcacca 263  Q
    ||||||||||||||||||||||| || |||||||||||| |||||||||| ||||| |||||||||||||||||    
T  9348911 gacaacgaaatcgatctcattcgttttcgatcaatttgttccaattggcgctcttcctccattccaaatcacca 9348838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 136 - 303
Target Start/End: Complemental strand, 9344803 - 9344639
Alignment:
Q  136 gcagactggtctgaactgccacaggagcttctgaatctgatatcgcaacaattcgacaacgaaatcgatctcattcgcttccgatcaatttgtaccaatt 235  Q
    ||||| ||||||||||| ||| |||| ||||| ||||| ||||||||||   ||||||| ||| | |||||||||||||| |||||  ||||| ||||||    
T  9344803 gcagattggtctgaactcccaaaggatcttctcaatcttatatcgcaacgcctcgacaatgaacttgatctcattcgctttcgatctgtttgttccaatt 9344704  T
Q  236 ggcgttcttcttccattccaaatcaccaccgtaacattttaaccatcaaattcccactcatcaaattc 303  Q
    |||  ||||||||||| || ||||| ||   |||||||||| || | || ||||||||| ||||||||    
T  9344703 ggcactcttcttccatccccaatcatca---taacattttaccctttaagttcccactcctcaaattc 9344639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 167 - 304
Target Start/End: Original strand, 9494028 - 9494165
Alignment:
Q  167 tgaatctgatatcgcaacaattcgacaacgaaatcgatctcattcgcttccgatcaatttgtaccaattggcgttcttcttccattccaaatcaccaccg 266  Q
    ||||||||||||| ||   | ||||||  |||||||||||||||||||| |||||| | |||  ||||||||| ||||||||||||| ||| ||||| |     
T  9494028 tgaatctgatatcacagggaatcgacactgaaatcgatctcattcgctttcgatcagtctgttgcaattggcgctcttcttccattcgaaagcaccatct 9494127  T
Q  267 taacattttaaccatcaaattcccactcatcaaattcc 304  Q
    |||||||||| || || |||| |||||| |||||||||    
T  9494128 taacattttacccttcgaatttccactcttcaaattcc 9494165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 133 - 240
Target Start/End: Original strand, 9625696 - 9625803
Alignment:
Q  133 gaggcagactggtctgaactgccacaggagcttctgaatctgatatcgcaacaattcgacaacgaaatcgatctcattcgcttccgatcaatttgtacca 232  Q
    |||| |||||||||||| || ||| |||||||| ||||| |||| ||||||  | | |||| ||||||||||||||| ||||| |||||  ||||| |||    
T  9625696 gaggtagactggtctgatctcccaaaggagcttttgaatatgatttcgcaaagaattgacatcgaaatcgatctcatacgctttcgatctgtttgttcca 9625795  T
Q  233 attggcgt 240  Q
    ||||||||    
T  9625796 attggcgt 9625803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 173 - 245
Target Start/End: Complemental strand, 9433795 - 9433723
Alignment:
Q  173 tgatatcgcaacaattcgacaacgaaatcgatctcattcgcttccgatcaatttgtaccaattggcgttcttc 245  Q
    |||| ||||||| | ||||||  ||||| ||||||||||||||||||||| ||||| || |||||||||||||    
T  9433795 tgatttcgcaacgaatcgacactgaaattgatctcattcgcttccgatcagtttgttcccattggcgttcttc 9433723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 122 - 238
Target Start/End: Original strand, 9645575 - 9645691
Alignment:
Q  122 ccatggaggaggaggcagactggtctgaactgccacaggagcttctgaatctgatatcgcaacaattcgacaacgaaatcgatctcattcgcttccgatc 221  Q
    |||||| || |||||||||||||||||| || ||  |||||||||||||| |||| ||  ||| | |||||| ||||||| || | |||||||| |||||    
T  9645575 ccatggcggcggaggcagactggtctgatctcccgaaggagcttctgaatatgatctcagaacgaatcgacatcgaaatcaatatgattcgctttcgatc 9645674  T
Q  222 aatttgtaccaattggc 238  Q
      ||||| |||||||||    
T  9645675 ggtttgttccaattggc 9645691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 136 - 240
Target Start/End: Original strand, 9654582 - 9654686
Alignment:
Q  136 gcagactggtctgaactgccacaggagcttctgaatctgatatcgcaacaattcgacaacgaaatcgatctcattcgcttccgatcaatttgtaccaatt 235  Q
    |||||||||||||| || ||  |||||||||||||| |||| ||  ||| | |||||| |||||||||| | |||||||| |||||  ||||| ||||||    
T  9654582 gcagactggtctgatctcccgaaggagcttctgaatatgatctcagaacgaatcgacatcgaaatcgatatgattcgctttcgatcggtttgttccaatt 9654681  T
Q  236 ggcgt 240  Q
    |||||    
T  9654682 ggcgt 9654686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 133 - 303
Target Start/End: Complemental strand, 9449259 - 9449095
Alignment:
Q  133 gaggcagactggtctgaactgccacaggagcttctgaatctgatatcgcaacaattcgacaacgaaatcgatctcattcgcttccgatcaatttgtacca 232  Q
    |||||||| |||||| |||| ||| |||| ||||| ||||| ||||| |||    ||||||| ||| ||||||||||||| || |||||| ||||| |||    
T  9449259 gaggcagattggtctcaactcccaaaggaacttctcaatctcatatcacaaaggctcgacaatgaactcgatctcattcgttttcgatcagtttgttcca 9449160  T
Q  233 attggcgttcttcttccattccaaatcaccaccgtaacattttaaccatcaaattcccactcatcaaattc 303  Q
     ||||   |   ||||||| |||||||| ||   |||||||||| || |||||||||||||| ||||||||    
T  9449159 tttgg---tgcacttccatcccaaatcatca---taacattttacccttcaaattcccactcctcaaattc 9449095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 221
Target Start/End: Original strand, 9441015 - 9441076
Alignment:
Q  160 gagcttctgaatctgatatcgcaacaattcgacaacgaaatcgatctcattcgcttccgatc 221  Q
    |||||||| |||||||||||||||| | ||||| | ||| ||||||||||||| || |||||    
T  9441015 gagcttctaaatctgatatcgcaacgaatcgacgatgaactcgatctcattcgttttcgatc 9441076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 133 - 290
Target Start/End: Original strand, 9613061 - 9613218
Alignment:
Q  133 gaggcagactggtctgaactgccacaggagcttctgaatctgatatcgcaacaattcgacaacgaaatcgatctcattcgcttccgatcaatttgtacca 232  Q
    |||| ||||||||||||||| ||  | || ||||||||||| ||||| |||    | ||||||||| |||| || ||||  || |||||||||||| | |    
T  9613061 gaggtagactggtctgaacttcctaaagaacttctgaatctcatatcacaatgcattgacaacgaactcgaccttattcattttcgatcaatttgttcaa 9613160  T
Q  233 attggcgttcttcttccattccaaatcaccaccgtaacattttaaccatcaaattccc 290  Q
      ||||| ||||| ||||| |||||||||||  ||||||| | | || ||||||||||    
T  9613161 cgtggcgctcttcctccatcccaaatcaccatagtaacatctcatccttcaaattccc 9613218  T

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Target: chr2 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 140 - 263
Target Start/End: Original strand, 20693476 - 20693599
Alignment:
Q  140 actggtctgaactgccacaggagcttctgaatctgatatcgcaacaattcgacaacgaaatcgatctcattcgcttccgatcaatttgtaccaattggcg 239  Q
    ||||||||||||||||  |||| |||||||||||||||||  ||||  |||||| |||| |||||||||||||||| |||||| ||||| ||||||||||    
T  20693476 actggtctgaactgccgaaggatcttctgaatctgatatccaaacacatcgacagcgaactcgatctcattcgctttcgatcagtttgttccaattggcg 20693575  T
Q  240 ttcttcttccattccaaatcacca 263  Q
    |||||| ||||| |||||||||||    
T  20693576 ttcttcctccatcccaaatcacca 20693599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 200 - 293
Target Start/End: Complemental strand, 18571957 - 18571864
Alignment:
Q  200 tcgatctcattcgcttccgatcaatttgtaccaattggcgttcttcttccattccaaatcaccaccgtaacattttaaccatcaaattcccact 293  Q
    |||||||||||||||||||||   ||||| |||| ||||||||||| ||||| |||||||| ||   |||||||||| || |||||||||||||    
T  18571957 tcgatctcattcgcttccgattggtttgtcccaaatggcgttcttcctccatcccaaatcatcattctaacattttacccttcaaattcccact 18571864  T

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Target: scaffold0038 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 133 - 260
Target Start/End: Original strand, 20300 - 20427
Alignment:
Q  133 gaggcagactggtctgaactgccacaggagcttctgaatctgatatcgcaacaattcgacaacgaaatcgatctcattcgcttccgatcaatttgtacca 232  Q
    |||||||| |||||| |||| ||| |||| ||||| ||||||||||| |||||| ||||||  ||| ||||||||||||  || |||||  ||| | |||    
T  20300 gaggcagattggtctcaacttccaaaggatcttctcaatctgatatcacaacaactcgacagtgaagtcgatctcattcattttcgatctgtttattcca 20399  T
Q  233 attggcgttcttcttccattccaaatca 260  Q
    ||||||  |||||||| | |||||||||    
T  20400 attggcactcttcttcaactccaaatca 20427  T

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Target: scaffold0038; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 133 - 260
Target Start/End: Complemental strand, 20571 - 20444
Alignment:
Q  133 gaggcagactggtctgaactgccacaggagcttctgaatctgatatcgcaacaattcgacaacgaaatcgatctcattcgcttccgatcaatttgtacca 232  Q
    |||||||| |||||| | || ||| |||| ||||| ||||||||||| |||| | ||||||| ||| ||||||||||||| || |||||  || ||  ||    
T  20571 gaggcagattggtctcagcttccaaaggatcttctcaatctgatatcacaacgactcgacaatgaactcgatctcattcgttttcgatctgttcgtttca 20472  T
Q  233 attggcgttcttcttccattccaaatca 260  Q
    |||| |  |||||||| |||||||||||    
T  20471 attgacactcttcttctattccaaatca 20444  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 133 - 260
Target Start/End: Complemental strand, 28177306 - 28177179
Alignment:
Q  133 gaggcagactggtctgaactgccacaggagcttctgaatctgatatcgcaacaattcgacaacgaaatcgatctcattcgcttccgatcaatttgtacca 232  Q
    |||||||| |||||| | || ||| |||| ||||| ||||||||||| |||| | ||||||| ||| ||||||||||||| || ||||   || || |||    
T  28177306 gaggcagattggtctcagcttccaaaggatcttctcaatctgatatcacaacgactcgacaatgaactcgatctcattcgttttcgatatgttcgttcca 28177207  T
Q  233 attggcgttcttcttccattccaaatca 260  Q
    |||| |  ||||||||||||||||||||    
T  28177206 attgacactcttcttccattccaaatca 28177179  T

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Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 133 - 260
Target Start/End: Original strand, 28219802 - 28219929
Alignment:
Q  133 gaggcagactggtctgaactgccacaggagcttctgaatctgatatcgcaacaattcgacaacgaaatcgatctcattcgcttccgatcaatttgtacca 232  Q
    |||||||| |||||| |||| ||| |||| ||||| ||||||||||| |||||| ||||||  ||| ||||||||||||  || |||||  ||| | |||    
T  28219802 gaggcagattggtctcaacttccaaaggatcttctcaatctgatatcacaacaactcgacagtgaagtcgatctcattcattttcgatctgtttattcca 28219901  T
Q  233 attggcgttcttcttccattccaaatca 260  Q
    ||||||  |||||||| | |||||||||    
T  28219902 attggcactcttcttcaactccaaatca 28219929  T

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Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 138 - 228
Target Start/End: Complemental strand, 7053047 - 7052957
Alignment:
Q  138 agactggtctgaactgccacaggagcttctgaatctgatatcgcaacaattcgacaacgaaatcgatctcattcgcttccgatcaatttgt 228  Q
    |||||||||| |||| |||  ||||||||| ||||||||||| |||| | | ||| | ||||||||| |||||||||||||||||| ||||    
T  7053047 agactggtctaaactcccaacggagcttctcaatctgatatcacaacgaattgacgatgaaatcgatttcattcgcttccgatcaacttgt 7052957  T

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Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 133 - 260
Target Start/End: Original strand, 28177035 - 28177162
Alignment:
Q  133 gaggcagactggtctgaactgccacaggagcttctgaatctgatatcgcaacaattcgacaacgaaatcgatctcattcgcttccgatcaatttgtacca 232  Q
    |||||||| |||| | | || ||| |||| ||||| ||||||||||| |||||| ||||||  ||| ||||||||||| | || |||||  ||||| |||    
T  28177035 gaggcagattggtatcagcttccaaaggatcttctcaatctgatatcacaacaactcgacagtgaagtcgatctcatttgttttcgatctgtttgttcca 28177134  T
Q  233 attggcgttcttcttccattccaaatca 260  Q
    ||||||  |||||||| | |||||||||    
T  28177135 attggcactcttcttcaactccaaatca 28177162  T

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Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 133 - 260
Target Start/End: Complemental strand, 28220073 - 28219946
Alignment:
Q  133 gaggcagactggtctgaactgccacaggagcttctgaatctgatatcgcaacaattcgacaacgaaatcgatctcattcgcttccgatcaatttgtacca 232  Q
    |||||||| |||||| | || ||| |||| ||||| ||||||||||| |||| | ||||||| ||| ||||||||||||| || |||||  || ||  ||    
T  28220073 gaggcagattggtctcagcttccaaaggatcttctcaatctgatatcacaacgactcgacaatgaactcgatctcattcgttttcgatctgttcgtttca 28219974  T
Q  233 attggcgttcttcttccattccaaatca 260  Q
    |||| |  |||||||| |||||||||||    
T  28219973 attgacactcttcttctattccaaatca 28219946  T

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Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 142 - 228
Target Start/End: Complemental strand, 7026704 - 7026618
Alignment:
Q  142 tggtctgaactgccacaggagcttctgaatctgatatcgcaacaattcgacaacgaaatcgatctcattcgcttccgatcaatttgt 228  Q
    |||||| |||| |||  ||||||||| |||||||||||||||| | || || | ||| |||||||||||| |||||||||| |||||    
T  7026704 tggtctaaactcccaacggagcttctcaatctgatatcgcaacgaatctacgaagaagtcgatctcattcacttccgatcagtttgt 7026618  T

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Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 158 - 260
Target Start/End: Complemental strand, 28133179 - 28133077
Alignment:
Q  158 aggagcttctgaatctgatatcgcaacaattcgacaacgaaatcgatctcattcgcttccgatcaatttgtaccaattggcgttcttcttccattccaaa 257  Q
    |||| ||||| ||||||||||| |||| | ||| ||| ||| |||||| |||||| ||  ||||| |||||  ||||||||  |||||||||||||||||    
T  28133179 aggatcttctcaatctgatatcacaacgactcggcaatgaactcgatcacattcgtttttgatcagtttgtttcaattggcactcttcttccattccaaa 28133080  T
Q  258 tca 260  Q
    |||    
T  28133079 tca 28133077  T

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Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 133 - 260
Target Start/End: Original strand, 28132933 - 28133060
Alignment:
Q  133 gaggcagactggtctgaactgccacaggagcttctgaatctgatatcgcaacaattcgacaacgaaatcgatctcattcgcttccgatcaatttgtacca 232  Q
    |||||||| |||||| |||| ||| |||| ||||| ||||||||||| |||| | ||| ||| ||| | ||||||||||| |  |||||  ||||| |||    
T  28132933 gaggcagattggtctcaacttccaaaggatcttctcaatctgatatctcaacgactcgtcaatgaacttgatctcattcgttatcgatctgtttgttcca 28133032  T
Q  233 attggcgttcttcttccattccaaatca 260  Q
    ||| | | |||||||| | |||||||||    
T  28133033 atttgagctcttcttcaactccaaatca 28133060  T

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Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 228
Target Start/End: Complemental strand, 7042423 - 7042334
Alignment:
Q  139 gactggtctgaactgccacaggagcttctgaatctgatatcgcaacaattcgacaacgaaatcgatctcattcgcttccgatcaatttgt 228  Q
    ||||||||| |||| |||  ||||||||| ||||||||||| |||| | |||| || ||| | ||||||||||| || | ||||||||||    
T  7042423 gactggtctaaacttccaacggagcttctcaatctgatatcacaacgaatcgataatgaagttgatctcattcgatttcaatcaatttgt 7042334  T

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Target: scaffold0455 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0455
Description:

Target: scaffold0455; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 133 - 260
Target Start/End: Original strand, 10839 - 10966
Alignment:
Q  133 gaggcagactggtctgaactgccacaggagcttctgaatctgatatcgcaacaattcgacaacgaaatcgatctcattcgcttccgatcaatttgtacca 232  Q
    |||||||| |||||| |||| ||| |||| ||||| ||||||||||| |||| | ||| ||| ||| | ||||||||||| |  |||||  ||||| |||    
T  10839 gaggcagattggtctcaacttccaaaggatcttctcaatctgatatctcaacgactcgtcaatgaacttgatctcattcgttatcgatctgtttgttcca 10938  T
Q  233 attggcgttcttcttccattccaaatca 260  Q
    ||| | | |||||||| | |||||||||    
T  10939 atttgagctcttcttcaactccaaatca 10966  T

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