View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10862_high_17 (Length: 316)

Name: NF10862_high_17
Description: NF10862
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10862_high_17
NF10862_high_17
[»] chr4 (1 HSPs)
chr4 (11-301)||(45762963-45763253)


Alignment Details
Target: chr4 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 11 - 301
Target Start/End: Complemental strand, 45763253 - 45762963
Alignment:
Q  11 caaaggctgatgagcgttaccggcgatcaaaaacatcatgaagaagacgcattgaagttgttaccggagaatataggtggtggcgctggtggaggtggtt 110  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  45763253 caaaagctgatgagcgttaccggcgatcaaaaacatcatgaagaagacgcattgaagttgttaccggagaatataggtggtggtgctggtggaggtggtt 45763154  T
Q  111 cttcgggttctggatcgttgctggaccatggtattgatttctctttgctgcagagtaaaacaagcaacggtggatttggatcgttggattggaatggtga 210  Q
    |||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45763153 cttctggttctggatcgttgatggaccatggtattgatttctctttgctgcagagtaaaacaagcaacggtggatttggatcgttggattggaatggtga 45763054  T
Q  211 tggtagtgctgatcatcaaggtttgtttgatcttcctaacaccgttgatcatggttactggaatcacactcaatggtctgatcaggatcat 301  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45763053 tggtagtgctgatcatcaaggtttgtttgatcttcctaacaccgttgatcatggttactggaatcacactcaatggtctgatcaggatcat 45762963  T

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