View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10862_high_19 (Length: 310)
Name: NF10862_high_19
Description: NF10862
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10862_high_19 |
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Alignment Details
Target: chr3 (Bit Score: 176; Significance: 8e-95; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 120 - 299
Target Start/End: Complemental strand, 44986601 - 44986422
Alignment:
| Q |
120 |
tttcttttgagactcaaaataatggattttggatcattacgttacgtatgcatttttcggattctataggattattcattatattacttgattaattagg |
219 |
Q |
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| T |
44986601 |
tttcttttgagactcaaaataatggattttggatcattacgttacgtatgcatttttcggattctataggattattcattatattacttgattaattagg |
44986502 |
T |
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| Q |
220 |
taactaagttagagtaaccgaagttaatttcaacagtgtctttggccttaattagcgccagcctattgtacattcattca |
299 |
Q |
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| T |
44986501 |
taactaagttagagtaaccgaagttaatttcaacagtgtctttggccttgattagcgccagcctattgtacattcattca |
44986422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 16 - 125
Target Start/End: Complemental strand, 44986910 - 44986802
Alignment:
| Q |
16 |
tcaacttcaagagtaaataaacaacaaggggtccaagtttttcttgctttgacaacattacaatagtgatcacgaatatagaaacttgtgggaagggcac |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
44986910 |
tcaacttcaagagtaaataaacaacaaggggtccaagttgttcttgctttgacaacattacaatagtgatcacgaatatagaaacttgtggg-agggcac |
44986812 |
T |
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| Q |
116 |
tccatttctt |
125 |
Q |
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| T |
44986811 |
tccatttctt |
44986802 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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