View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10862_high_23 (Length: 251)

Name: NF10862_high_23
Description: NF10862
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10862_high_23
NF10862_high_23
[»] chr5 (10 HSPs)
chr5 (54-221)||(4300786-4300950)
chr5 (54-221)||(4305847-4306011)
chr5 (116-240)||(4294311-4294430)
chr5 (54-221)||(4311201-4311368)
chr5 (3-44)||(18147717-18147758)
chr5 (2-43)||(33753984-33754025)
chr5 (3-42)||(3671219-3671258)
chr5 (2-43)||(33849615-33849656)
chr5 (3-35)||(23648158-23648190)
chr5 (3-35)||(23810382-23810414)
[»] chr7 (11 HSPs)
chr7 (2-42)||(37451257-37451297)
chr7 (3-46)||(41250068-41250111)
chr7 (2-38)||(1438119-1438155)
chr7 (2-42)||(8227350-8227390)
chr7 (3-37)||(34568354-34568388)
chr7 (3-52)||(30844397-30844446)
chr7 (5-38)||(41244942-41244975)
chr7 (9-42)||(42817560-42817593)
chr7 (3-46)||(25775668-25775712)
chr7 (2-42)||(34000263-34000303)
chr7 (3-47)||(41029268-41029312)
[»] chr4 (12 HSPs)
chr4 (3-42)||(15175142-15175181)
chr4 (2-42)||(470338-470378)
chr4 (3-42)||(8027418-8027457)
chr4 (3-46)||(12058316-12058359)
chr4 (3-42)||(20921863-20921902)
chr4 (3-38)||(26238599-26238634)
chr4 (2-44)||(897424-897466)
chr4 (2-40)||(12263255-12263293)
chr4 (2-42)||(18903778-18903818)
chr4 (2-42)||(30135141-30135181)
chr4 (2-42)||(32006501-32006541)
chr4 (2-30)||(49491201-49491229)
[»] chr2 (12 HSPs)
chr2 (3-42)||(21482540-21482579)
chr2 (3-42)||(9389469-9389508)
chr2 (3-42)||(36547256-36547295)
chr2 (3-42)||(39761439-39761478)
chr2 (3-49)||(17280969-17281015)
chr2 (4-38)||(35234161-35234195)
chr2 (2-43)||(29350065-29350106)
chr2 (2-42)||(12893264-12893304)
chr2 (3-47)||(28771578-28771622)
chr2 (3-43)||(32901381-32901421)
chr2 (3-39)||(35281232-35281268)
chr2 (3-43)||(35685082-35685122)
[»] chr8 (4 HSPs)
chr8 (3-37)||(11759031-11759065)
chr8 (2-42)||(10320497-10320537)
chr8 (2-42)||(19701364-19701404)
chr8 (3-44)||(29652217-29652258)
[»] chr6 (4 HSPs)
chr6 (1-37)||(3654970-3655006)
chr6 (2-42)||(33608338-33608378)
chr6 (2-42)||(22576161-22576201)
chr6 (2-42)||(24623337-24623377)
[»] chr3 (6 HSPs)
chr3 (3-47)||(36431805-36431849)
chr3 (3-42)||(37921019-37921058)
chr3 (2-38)||(35208857-35208893)
chr3 (5-33)||(43108066-43108094)
chr3 (7-43)||(50542118-50542154)
chr3 (3-43)||(54230120-54230160)
[»] chr1 (6 HSPs)
chr1 (2-42)||(33577930-33577970)
chr1 (3-42)||(13794529-13794568)
chr1 (3-42)||(30937476-30937515)
chr1 (3-37)||(10843342-10843376)
chr1 (2-46)||(2817393-2817437)
chr1 (2-42)||(22021420-22021460)
[»] scaffold0426 (1 HSPs)
scaffold0426 (2-49)||(5860-5907)
[»] scaffold1327 (1 HSPs)
scaffold1327 (2-42)||(557-597)


Alignment Details
Target: chr5 (Bit Score: 130; Significance: 2e-67; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 54 - 221
Target Start/End: Original strand, 4300786 - 4300950
Alignment:
Q  54 aatttacattaaattaattgttaatgttgttttattacagtgtaatgaaggctaatattatcaaggaagagcctagaagaagtgcccaaatgacaatttt 153  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |   ||||||||||||||||    
T  4300786 aatttgcattaaattaattgttaatgttgttttattacagtgtaatgaaggctaatattatcaaggaagagcctaaatgta---cccaaatgacaatttt 4300882  T
Q  154 ttatgatgggaaagtaattgtgtttgatgatattccagctgaaaaagtcaaggacatcatggtctttt 221  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  4300883 ttatgatgggaaaataattgtgtttgatgatattccagctgaaaaagtcgaggacatcatggtctttt 4300950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 54 - 221
Target Start/End: Original strand, 4305847 - 4306011
Alignment:
Q  54 aatttacattaaattaattgttaatgttgttttattacagtgtaatgaaggctaatattatcaaggaagagcctagaagaagtgcccaaatgacaatttt 153  Q
    ||||| |||||| ||||||||||| |||||||||||||||||||||||||||||||||||  ||||||||||||   | | |||| ||||||||||| ||    
T  4305847 aatttgcattaagttaattgttaaagttgttttattacagtgtaatgaaggctaatattaagaaggaagagcct---aaatgtgcacaaatgacaatctt 4305943  T
Q  154 ttatgatgggaaagtaattgtgtttgatgatattccagctgaaaaagtcaaggacatcatggtctttt 221  Q
     |||||||||||||||||||||||||||||| |||||||||| |||| ||| |||||||||| |||||    
T  4305944 gtatgatgggaaagtaattgtgtttgatgatgttccagctgataaagccaaagacatcatggactttt 4306011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 116 - 240
Target Start/End: Original strand, 4294311 - 4294430
Alignment:
Q  116 aaggaagagcctagaagaagtgcccaaatgacaattttttatgatgggaaagtaattgtgtttgatgatattccagctgaaaaagtcaaggacatcatgg 215  Q
    ||||||||||||||| |   ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  4294311 aaggaagagcctagatg---tgcacaaatgacaattttttatgatgggaaagtaattgtgtttgatgatattccagctgaaaaagtcaagggcatcatgg 4294407  T
Q  216 tcttttgtgcaccaaaggaactact 240  Q
    |||||  ||||||||||||||||||    
T  4294408 tcttt--tgcaccaaaggaactact 4294430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 54 - 221
Target Start/End: Original strand, 4311201 - 4311368
Alignment:
Q  54 aatttacattaaattaattgttaatgttgttt---tattacagtgtaatgaaggctaatattatcaaggaagagcctagaagaagtgcccaaatgacaat 150  Q
    ||||| ||||||||||||||||||||||||||   ||||||||||||||||||||||||||||  ||||| ||||||||  |   ||| |||||||||||    
T  4311201 aatttgcattaaattaattgttaatgttgtttaattattacagtgtaatgaaggctaatattaagaaggaggagcctagttg---tgcacaaatgacaat 4311297  T
Q  151 tttttatgatgggaaagtaattgtgtttgatgatattccagctgaaaaagtcaaggacatcatggtctttt 221  Q
     ||||||||||||||||||||||||||||||||| |||||||||| ||||  || |||||||||| |||||    
T  4311298 cttttatgatgggaaagtaattgtgtttgatgatgttccagctgataaagctaaagacatcatggactttt 4311368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 44
Target Start/End: Complemental strand, 18147758 - 18147717
Alignment:
Q  3 catatattatacattatccttatcaactgagctaaactcatg 44  Q
    |||||||||| |||| ||||||||||||||||||||||||||    
T  18147758 catatattatgcattgtccttatcaactgagctaaactcatg 18147717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 43
Target Start/End: Original strand, 33753984 - 33754025
Alignment:
Q  2 acatatattatacattatccttatcaactgagctaaactcat 43  Q
    |||||||||||||||| || ||||||||||||||||||||||    
T  33753984 acatatattatacattgtctttatcaactgagctaaactcat 33754025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 42
Target Start/End: Complemental strand, 3671258 - 3671219
Alignment:
Q  3 catatattatacattatccttatcaactgagctaaactca 42  Q
    ||||||||||||||||||||||||||||||| ||| ||||    
T  3671258 catatattatacattatccttatcaactgagttaagctca 3671219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 43
Target Start/End: Original strand, 33849615 - 33849656
Alignment:
Q  2 acatatattatacattatccttatcaactgagctaaactcat 43  Q
    ||||||| |||||||| || ||||||||||||||||||||||    
T  33849615 acatatagtatacattgtctttatcaactgagctaaactcat 33849656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 35
Target Start/End: Original strand, 23648158 - 23648190
Alignment:
Q  3 catatattatacattatccttatcaactgagct 35  Q
    ||||||||||| |||||||||||||||||||||    
T  23648158 catatattatatattatccttatcaactgagct 23648190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 35
Target Start/End: Complemental strand, 23810414 - 23810382
Alignment:
Q  3 catatattatacattatccttatcaactgagct 35  Q
    ||||||||||| |||||||||||||||||||||    
T  23810414 catatattatatattatccttatcaactgagct 23810382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 2 - 42
Target Start/End: Original strand, 37451257 - 37451297
Alignment:
Q  2 acatatattatacattatccttatcaactgagctaaactca 42  Q
    ||||||||||| |||||||||||||||||||||||||||||    
T  37451257 acatatattatgcattatccttatcaactgagctaaactca 37451297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 46
Target Start/End: Original strand, 41250068 - 41250111
Alignment:
Q  3 catatattatacattatccttatcaactgagctaaactcatggg 46  Q
    ||||||||||||||| | ||||||||||||||||||||||||||    
T  41250068 catatattatacattgttcttatcaactgagctaaactcatggg 41250111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 38
Target Start/End: Original strand, 1438119 - 1438155
Alignment:
Q  2 acatatattatacattatccttatcaactgagctaaa 38  Q
    |||| ||||||||||||||||||||||||||||||||    
T  1438119 acatctattatacattatccttatcaactgagctaaa 1438155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 42
Target Start/End: Complemental strand, 8227390 - 8227350
Alignment:
Q  2 acatatattatacattatccttatcaactgagctaaactca 42  Q
    ||||||||||| |||| ||||||||||||||||||||||||    
T  8227390 acatatattatgcattgtccttatcaactgagctaaactca 8227350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 37
Target Start/End: Original strand, 34568354 - 34568388
Alignment:
Q  3 catatattatacattatccttatcaactgagctaa 37  Q
    |||||||||| ||||||||||||||||||||||||    
T  34568354 catatattatgcattatccttatcaactgagctaa 34568388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 52
Target Start/End: Original strand, 30844397 - 30844446
Alignment:
Q  3 catatattatacattatccttatcaactgagctaaactcatgggaacggt 52  Q
    ||||||||||| |||||||||| ||||||||||||| ||| ||| |||||    
T  30844397 catatattatatattatccttaccaactgagctaaattcacgggcacggt 30844446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 38
Target Start/End: Complemental strand, 41244975 - 41244942
Alignment:
Q  5 tatattatacattatccttatcaactgagctaaa 38  Q
    |||||||||||||||| |||||||||||||||||    
T  41244975 tatattatacattatctttatcaactgagctaaa 41244942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 42
Target Start/End: Complemental strand, 42817593 - 42817560
Alignment:
Q  9 ttatacattatccttatcaactgagctaaactca 42  Q
    |||| |||||||||||||||||||||||||||||    
T  42817593 ttatgcattatccttatcaactgagctaaactca 42817560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 46
Target Start/End: Original strand, 25775668 - 25775712
Alignment:
Q  3 catatattatacattatcc-ttatcaactgagctaaactcatggg 46  Q
    ||||||||||||||||||| ||| ||| |||||||||||||||||    
T  25775668 catatattatacattatcctttaccaagtgagctaaactcatggg 25775712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 42
Target Start/End: Complemental strand, 34000303 - 34000263
Alignment:
Q  2 acatatattatacattatccttatcaactgagctaaactca 42  Q
    ||||||||||| |||||||||||||||||||| ||| ||||    
T  34000303 acatatattatgcattatccttatcaactgagttaagctca 34000263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 47
Target Start/End: Complemental strand, 41029312 - 41029268
Alignment:
Q  3 catatattatacattatccttatcaactgagctaaactcatggga 47  Q
    ||||||||||||||| |||||| |||||||||||| |||| ||||    
T  41029312 catatattatacattgtccttaccaactgagctaagctcacggga 41029268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 42
Target Start/End: Complemental strand, 15175181 - 15175142
Alignment:
Q  3 catatattatacattatccttatcaactgagctaaactca 42  Q
    ||||||||||||||||| ||||||||||||||||||||||    
T  15175181 catatattatacattattcttatcaactgagctaaactca 15175142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 42
Target Start/End: Original strand, 470338 - 470378
Alignment:
Q  2 acatatattatacattatccttatcaactgagctaaactca 42  Q
    ||||||||||||||||||| |||||||||||||||| ||||    
T  470338 acatatattatacattatctttatcaactgagctaagctca 470378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 42
Target Start/End: Original strand, 8027418 - 8027457
Alignment:
Q  3 catatattatacattatccttatcaactgagctaaactca 42  Q
    |||||||||| ||||||||||| |||||||||||||||||    
T  8027418 catatattatgcattatccttaccaactgagctaaactca 8027457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 46
Target Start/End: Complemental strand, 12058359 - 12058316
Alignment:
Q  3 catatattatacattatccttatcaactgagctaaactcatggg 46  Q
    |||||||||| ||||||||||| | |||||||||||||||||||    
T  12058359 catatattatgcattatccttaccgactgagctaaactcatggg 12058316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 42
Target Start/End: Original strand, 20921863 - 20921902
Alignment:
Q  3 catatattatacattatccttatcaactgagctaaactca 42  Q
    |||||||||||||||||||||  |||||||||||||||||    
T  20921863 catatattatacattatccttgccaactgagctaaactca 20921902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 38
Target Start/End: Original strand, 26238599 - 26238634
Alignment:
Q  3 catatattatacattatccttatcaactgagctaaa 38  Q
    ||||||||||||||||| ||||||||||||||||||    
T  26238599 catatattatacattattcttatcaactgagctaaa 26238634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 44
Target Start/End: Complemental strand, 897466 - 897424
Alignment:
Q  2 acatatattatacattatccttatcaactgagctaaactcatg 44  Q
    |||||||||||||||| ||| || |||||||||||||||||||    
T  897466 acatatattatacattgtccataccaactgagctaaactcatg 897424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 40
Target Start/End: Complemental strand, 12263293 - 12263255
Alignment:
Q  2 acatatattatacattatccttatcaactgagctaaact 40  Q
    |||||||||||||||| ||||| ||||||||||||||||    
T  12263293 acatatattatacattgtccttgtcaactgagctaaact 12263255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 42
Target Start/End: Original strand, 18903778 - 18903818
Alignment:
Q  2 acatatattatacattatccttatcaactgagctaaactca 42  Q
    ||||||||||| ||||||  |||||||||||||||||||||    
T  18903778 acatatattatgcattatttttatcaactgagctaaactca 18903818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 42
Target Start/End: Complemental strand, 30135181 - 30135141
Alignment:
Q  2 acatatattatacattatccttatcaactgagctaaactca 42  Q
    ||||||||||| |||||||||||||||||||| ||| ||||    
T  30135181 acatatattatgcattatccttatcaactgagttaagctca 30135141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 42
Target Start/End: Complemental strand, 32006541 - 32006501
Alignment:
Q  2 acatatattatacattatccttatcaactgagctaaactca 42  Q
    ||||||||||| |||||||| || |||||||||||||||||    
T  32006541 acatatattatgcattatccctaccaactgagctaaactca 32006501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 30
Target Start/End: Complemental strand, 49491229 - 49491201
Alignment:
Q  2 acatatattatacattatccttatcaact 30  Q
    |||||||||||||||||||||||||||||    
T  49491229 acatatattatacattatccttatcaact 49491201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 42
Target Start/End: Original strand, 21482540 - 21482579
Alignment:
Q  3 catatattatacattatccttatcaactgagctaaactca 42  Q
    |||||||||||||||||||||| |||||||||||||||||    
T  21482540 catatattatacattatccttaccaactgagctaaactca 21482579  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 42
Target Start/End: Complemental strand, 9389508 - 9389469
Alignment:
Q  3 catatattatacattatccttatcaactgagctaaactca 42  Q
    |||||||||||||||||||||||||| |||| ||||||||    
T  9389508 catatattatacattatccttatcaattgagttaaactca 9389469  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 42
Target Start/End: Original strand, 36547256 - 36547295
Alignment:
Q  3 catatattatacattatccttatcaactgagctaaactca 42  Q
    |||||||||||||||||||||| |||||||||||| ||||    
T  36547256 catatattatacattatccttaccaactgagctaagctca 36547295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 42
Target Start/End: Complemental strand, 39761478 - 39761439
Alignment:
Q  3 catatattatacattatccttatcaactgagctaaactca 42  Q
    |||||||||| |||| ||||||||||||||||||||||||    
T  39761478 catatattatgcattgtccttatcaactgagctaaactca 39761439  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 49
Target Start/End: Original strand, 17280969 - 17281015
Alignment:
Q  3 catatattatacattatccttatcaactgagctaaactcatgggaac 49  Q
    ||||||||||||||||| | ||||||||||||||| |||||| ||||    
T  17280969 catatattatacattattcatatcaactgagctaagctcatgagaac 17281015  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 38
Target Start/End: Original strand, 35234161 - 35234195
Alignment:
Q  4 atatattatacattatccttatcaactgagctaaa 38  Q
    |||||||||||||||||| ||||||||||||||||    
T  35234161 atatattatacattatccctatcaactgagctaaa 35234195  T

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Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 43
Target Start/End: Original strand, 29350065 - 29350106
Alignment:
Q  2 acatatattatacattatccttatcaactgagctaaactcat 43  Q
    ||||||||||| ||||||||||| |||||||||||| |||||    
T  29350065 acatatattatgcattatccttaacaactgagctaagctcat 29350106  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 42
Target Start/End: Original strand, 12893264 - 12893304
Alignment:
Q  2 acatatattatacattatccttatcaactgagctaaactca 42  Q
    |||||||||||||||| | ||||||||||||||||| ||||    
T  12893264 acatatattatacattgttcttatcaactgagctaagctca 12893304  T

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Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 47
Target Start/End: Complemental strand, 28771622 - 28771578
Alignment:
Q  3 catatattatacattatccttatcaactgagctaaactcatggga 47  Q
    |||||||||| |||| |||||| ||||||||||||||||| ||||    
T  28771622 catatattatgcattgtccttaccaactgagctaaactcacggga 28771578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 43
Target Start/End: Complemental strand, 32901421 - 32901381
Alignment:
Q  3 catatattatacattatccttatcaactgagctaaactcat 43  Q
    ||||| |||| |||||||| |||||||||||||||||||||    
T  32901421 catattttatgcattatccatatcaactgagctaaactcat 32901381  T

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Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 39
Target Start/End: Original strand, 35281232 - 35281268
Alignment:
Q  3 catatattatacattatccttatcaactgagctaaac 39  Q
    ||||||||||||||||||| | |||||||||||||||    
T  35281232 catatattatacattatccatttcaactgagctaaac 35281268  T

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Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 43
Target Start/End: Original strand, 35685082 - 35685122
Alignment:
Q  3 catatattatacattatccttatcaactgagctaaactcat 43  Q
    |||||||||| |||| |||||| ||||||||||||||||||    
T  35685082 catatattatgcattgtccttaccaactgagctaaactcat 35685122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.00000000009; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 3 - 37
Target Start/End: Complemental strand, 11759065 - 11759031
Alignment:
Q  3 catatattatacattatccttatcaactgagctaa 37  Q
    |||||||||||||||||||||||||||||||||||    
T  11759065 catatattatacattatccttatcaactgagctaa 11759031  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 42
Target Start/End: Complemental strand, 10320537 - 10320497
Alignment:
Q  2 acatatattatacattatccttatcaactgagctaaactca 42  Q
    ||||||||||| |||||| ||||||||||||||||||||||    
T  10320537 acatatattatgcattattcttatcaactgagctaaactca 10320497  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 42
Target Start/End: Original strand, 19701364 - 19701404
Alignment:
Q  2 acatatattatacattatccttatcaactgagctaaactca 42  Q
    ||||||||||| |||||||||||||||||||| ||||||||    
T  19701364 acatatattatgcattatccttatcaactgagttaaactca 19701404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 44
Target Start/End: Complemental strand, 29652258 - 29652217
Alignment:
Q  3 catatattatacattatccttatcaactgagctaaactcatg 44  Q
    |||||||||| |||| | ||||||||||||||||||||||||    
T  29652258 catatattatgcattgttcttatcaactgagctaaactcatg 29652217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 3655006 - 3654970
Alignment:
Q  1 cacatatattatacattatccttatcaactgagctaa 37  Q
    |||||||||||||||||||||||||||||||| ||||    
T  3655006 cacatatattatacattatccttatcaactgacctaa 3654970  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 42
Target Start/End: Complemental strand, 33608378 - 33608338
Alignment:
Q  2 acatatattatacattatccttatcaactgagctaaactca 42  Q
    |||||||||||||||| ||||||||||||||| ||||||||    
T  33608378 acatatattatacattgtccttatcaactgagataaactca 33608338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 42
Target Start/End: Complemental strand, 22576201 - 22576161
Alignment:
Q  2 acatatattatacattatccttatcaactgagctaaactca 42  Q
    ||||||||||| |||| |||||| |||||||||||||||||    
T  22576201 acatatattattcattgtccttaccaactgagctaaactca 22576161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 42
Target Start/End: Original strand, 24623337 - 24623377
Alignment:
Q  2 acatatattatacattatccttatcaactgagctaaactca 42  Q
    ||||||||||| |||| ||| ||||||||||||||||||||    
T  24623337 acatatattatgcattgtccatatcaactgagctaaactca 24623377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 47
Target Start/End: Complemental strand, 36431849 - 36431805
Alignment:
Q  3 catatattatacattatccttatcaactgagctaaactcatggga 47  Q
    ||||||||||||||||||| || ||||||||||||||||| ||||    
T  36431849 catatattatacattatccctaccaactgagctaaactcaaggga 36431805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 42
Target Start/End: Original strand, 37921019 - 37921058
Alignment:
Q  3 catatattatacattatccttatcaactgagctaaactca 42  Q
    |||||||||| |||||||| ||||||||||||||||||||    
T  37921019 catatattatgcattatccctatcaactgagctaaactca 37921058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 38
Target Start/End: Original strand, 35208857 - 35208893
Alignment:
Q  2 acatatattatacattatccttatcaactgagctaaa 38  Q
    |||||||||||||||||| |||| |||||||||||||    
T  35208857 acatatattatacattattcttaccaactgagctaaa 35208893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 33
Target Start/End: Original strand, 43108066 - 43108094
Alignment:
Q  5 tatattatacattatccttatcaactgag 33  Q
    |||||||||||||||||||||||||||||    
T  43108066 tatattatacattatccttatcaactgag 43108094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 43
Target Start/End: Complemental strand, 50542154 - 50542118
Alignment:
Q  7 tattatacattatccttatcaactgagctaaactcat 43  Q
    ||||||||| |||||||||||||||||||||| ||||    
T  50542154 tattatacaatatccttatcaactgagctaaattcat 50542118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 43
Target Start/End: Original strand, 54230120 - 54230160
Alignment:
Q  3 catatattatacattatccttatcaactgagctaaactcat 43  Q
    |||||||||| |||| |||||| ||||||||||||||||||    
T  54230120 catatattatgcattgtccttaccaactgagctaaactcat 54230160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 42
Target Start/End: Complemental strand, 33577970 - 33577930
Alignment:
Q  2 acatatattatacattatccttatcaactgagctaaactca 42  Q
    |||||||||||||||| |||||| |||||||||||||||||    
T  33577970 acatatattatacattgtccttagcaactgagctaaactca 33577930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 42
Target Start/End: Original strand, 13794529 - 13794568
Alignment:
Q  3 catatattatacattatccttatcaactgagctaaactca 42  Q
    |||||||||| |||||||||||||||||||||||| ||||    
T  13794529 catatattatgcattatccttatcaactgagctaagctca 13794568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 42
Target Start/End: Complemental strand, 30937515 - 30937476
Alignment:
Q  3 catatattatacattatccttatcaactgagctaaactca 42  Q
    ||||||||||||||| |||||||||||| |||||||||||    
T  30937515 catatattatacattgtccttatcaactaagctaaactca 30937476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 37
Target Start/End: Original strand, 10843342 - 10843376
Alignment:
Q  3 catatattatacattatccttatcaactgagctaa 37  Q
    |||||||||| ||||||||||||||||||||||||    
T  10843342 catatattatgcattatccttatcaactgagctaa 10843376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 46
Target Start/End: Original strand, 2817393 - 2817437
Alignment:
Q  2 acatatattatacattatccttatcaactgagctaaactcatggg 46  Q
    ||||||||||| |||| |||||| ||||||||||||| |||||||    
T  2817393 acatatattatgcattgtccttaccaactgagctaaattcatggg 2817437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 42
Target Start/End: Complemental strand, 22021460 - 22021420
Alignment:
Q  2 acatatattatacattatccttatcaactgagctaaactca 42  Q
    |||||||||||||||| |||||| |||||||||||| ||||    
T  22021460 acatatattatacattgtccttagcaactgagctaagctca 22021420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0426 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0426
Description:

Target: scaffold0426; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 49
Target Start/End: Original strand, 5860 - 5907
Alignment:
Q  2 acatatattatacattatccttatcaactgagctaaactcatgggaac 49  Q
    |||||||||||||||||| ||| ||||||||||||| |||| ||||||    
T  5860 acatatattatacattattcttttcaactgagctaagctcacgggaac 5907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1327 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold1327
Description:

Target: scaffold1327; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 42
Target Start/End: Complemental strand, 597 - 557
Alignment:
Q  2 acatatattatacattatccttatcaactgagctaaactca 42  Q
    |||||||||||||| | ||||||||||||||||||| ||||    
T  597 acatatattatacactgtccttatcaactgagctaagctca 557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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