View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10862_high_33 (Length: 235)

Name: NF10862_high_33
Description: NF10862
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10862_high_33
NF10862_high_33
[»] chr5 (7 HSPs)
chr5 (1-154)||(20870406-20870559)
chr5 (180-235)||(41263347-41263403)
chr5 (178-231)||(10569844-10569897)
chr5 (191-235)||(4577002-4577046)
chr5 (180-235)||(8176333-8176389)
chr5 (180-235)||(27942476-27942532)
chr5 (188-235)||(31013874-31013922)
[»] chr8 (12 HSPs)
chr8 (178-235)||(34955696-34955753)
chr8 (186-235)||(42860706-42860755)
chr8 (178-235)||(41477166-41477224)
chr8 (186-235)||(5212283-5212332)
chr8 (180-235)||(18029529-18029585)
chr8 (180-235)||(36912402-36912458)
chr8 (180-235)||(38584924-38584980)
chr8 (179-235)||(40283459-40283516)
chr8 (179-235)||(43524421-43524478)
chr8 (180-235)||(4625524-4625580)
chr8 (180-235)||(8610011-8610067)
chr8 (180-235)||(26632183-26632239)
[»] chr1 (11 HSPs)
chr1 (178-235)||(44651055-44651112)
chr1 (186-235)||(643852-643901)
chr1 (179-235)||(29523685-29523742)
chr1 (190-235)||(44451300-44451345)
chr1 (186-235)||(31468122-31468172)
chr1 (178-235)||(41542311-41542369)
chr1 (186-235)||(45239127-45239177)
chr1 (183-235)||(8464085-8464138)
chr1 (180-235)||(2478358-2478414)
chr1 (180-235)||(44334272-44334328)
chr1 (180-235)||(48388138-48388194)
[»] chr7 (5 HSPs)
chr7 (180-235)||(22191207-22191262)
chr7 (186-235)||(48984900-48984949)
chr7 (186-235)||(21654839-21654888)
chr7 (180-235)||(22737625-22737681)
chr7 (186-235)||(30630844-30630893)
[»] chr3 (20 HSPs)
chr3 (180-235)||(25832754-25832809)
chr3 (180-235)||(41890522-41890577)
chr3 (185-235)||(42601535-42601585)
chr3 (178-235)||(42601746-42601804)
chr3 (186-235)||(33934985-33935034)
chr3 (186-235)||(51427094-51427143)
chr3 (180-235)||(46572955-46573011)
chr3 (186-235)||(17466508-17466558)
chr3 (186-235)||(25790805-25790855)
chr3 (186-235)||(47144166-47144216)
chr3 (193-235)||(49823200-49823242)
chr3 (179-235)||(12974654-12974711)
chr3 (179-235)||(26165584-26165641)
chr3 (180-235)||(4045967-4046023)
chr3 (180-235)||(6048726-6048782)
chr3 (188-235)||(25450664-25450712)
chr3 (180-235)||(29701669-29701725)
chr3 (180-235)||(32120468-32120524)
chr3 (180-235)||(44084296-44084352)
chr3 (180-235)||(51999267-51999323)
[»] chr6 (4 HSPs)
chr6 (185-235)||(6380519-6380569)
chr6 (186-235)||(631509-631559)
chr6 (186-235)||(29428548-29428598)
chr6 (180-235)||(8660544-8660600)
[»] chr2 (11 HSPs)
chr2 (185-235)||(9074255-9074305)
chr2 (183-235)||(37245491-37245544)
chr2 (180-235)||(14152098-14152154)
chr2 (186-235)||(8852050-8852100)
chr2 (186-235)||(12855012-12855062)
chr2 (186-235)||(24997073-24997123)
chr2 (186-235)||(30822614-30822664)
chr2 (179-235)||(17485803-17485860)
chr2 (180-235)||(7588535-7588591)
chr2 (180-235)||(22351645-22351701)
chr2 (180-235)||(43021728-43021784)
[»] chr4 (9 HSPs)
chr4 (186-235)||(53184126-53184175)
chr4 (186-235)||(46917541-46917591)
chr4 (186-235)||(31848804-31848853)
chr4 (179-235)||(45081442-45081499)
chr4 (180-235)||(3533337-3533393)
chr4 (180-235)||(3618483-3618539)
chr4 (180-235)||(6290586-6290642)
chr4 (180-235)||(34199299-34199355)
chr4 (180-235)||(40721021-40721077)
[»] scaffold0012 (1 HSPs)
scaffold0012 (178-231)||(123999-124053)


Alignment Details
Target: chr5 (Bit Score: 138; Significance: 3e-72; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 154
Target Start/End: Original strand, 20870406 - 20870559
Alignment:
Q  1 catgtaatgtgattagactagacacttgagtagtaataataattagtgttttcgaggaaggcaggttttcaaatctaacccatagattttgtttgatgat 100  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20870406 catgcaatgtgattagactagacacttgagtagtaataataattagtgttttcgaggaaggcaggttttcaaatctaacccatagattttgtttgatgat 20870505  T
Q  101 gcaatgcatcttttttatgaccgattgaaagctatctatccaatcaatacatta 154  Q
    |||||||||||||| ||||||||||||||| |||||||||||||||||| ||||    
T  20870506 gcaatgcatcttttatatgaccgattgaaaactatctatccaatcaatatatta 20870559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 180 - 235
Target Start/End: Original strand, 41263347 - 41263403
Alignment:
Q  180 ttcaacaccattcaaca-ccactttttcaatgcccaacgctccacagcattttctct 235  Q
    ||||||||||||||||| ||||||||||||| |||||||||||||| ||||||||||    
T  41263347 ttcaacaccattcaacatccactttttcaattcccaacgctccacatcattttctct 41263403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 178 - 231
Target Start/End: Complemental strand, 10569897 - 10569844
Alignment:
Q  178 ctttcaacaccattcaacaccactttttcaatgcccaacgctccacagcatttt 231  Q
    |||| |||||| |||||||||||||||||||| |||||| ||||||| ||||||    
T  10569897 ctttaaacacctttcaacaccactttttcaattcccaacactccacatcatttt 10569844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 191 - 235
Target Start/End: Original strand, 4577002 - 4577046
Alignment:
Q  191 tcaacaccactttttcaatgcccaacgctccacagcattttctct 235  Q
    ||||||||||||||||||| |||||| ||||||| ||||||||||    
T  4577002 tcaacaccactttttcaattcccaacactccacatcattttctct 4577046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 180 - 235
Target Start/End: Complemental strand, 8176389 - 8176333
Alignment:
Q  180 ttcaacaccattcaacacc-actttttcaatgcccaacgctccacagcattttctct 235  Q
    ||||||| ||||||||||| ||||||||||| |||||| ||||||| ||||||||||    
T  8176389 ttcaacatcattcaacacccactttttcaattcccaacactccacatcattttctct 8176333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 235
Target Start/End: Original strand, 27942476 - 27942532
Alignment:
Q  180 ttcaacaccattcaacacc-actttttcaatgcccaacgctccacagcattttctct 235  Q
    ||||||| | ||||||||| ||||||||||| |||||| ||||||| ||||||||||    
T  27942476 ttcaacaaccttcaacacccactttttcaatccccaacactccacatcattttctct 27942532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 235
Target Start/End: Complemental strand, 31013922 - 31013874
Alignment:
Q  188 cattcaacacc-actttttcaatgcccaacgctccacagcattttctct 235  Q
    ||||||||||| ||||||||||| |||||| ||||||| ||||||||||    
T  31013922 cattcaacacccactttttcaattcccaacactccacatcattttctct 31013874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 2e-17; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 178 - 235
Target Start/End: Complemental strand, 34955753 - 34955696
Alignment:
Q  178 ctttcaacaccattcaacaccactttttcaatgcccaacgctccacagcattttctct 235  Q
    |||||||||||||||||||||||||||||||| |||||| ||||||| ||||||||||    
T  34955753 ctttcaacaccattcaacaccactttttcaattcccaacactccacatcattttctct 34955696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 186 - 235
Target Start/End: Original strand, 42860706 - 42860755
Alignment:
Q  186 accattcaacaccactttttcaatgcccaacgctccacagcattttctct 235  Q
    |||||||||||||||||||||||| |||||| ||||||| ||||||||||    
T  42860706 accattcaacaccactttttcaattcccaacactccacatcattttctct 42860755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 178 - 235
Target Start/End: Original strand, 41477166 - 41477224
Alignment:
Q  178 ctttcaacaccattcaaca-ccactttttcaatgcccaacgctccacagcattttctct 235  Q
    ||||||||||||||||||| ||||||||||||| |||||| ||||||  ||||||||||    
T  41477166 ctttcaacaccattcaacatccactttttcaattcccaacactccacgtcattttctct 41477224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 186 - 235
Target Start/End: Original strand, 5212283 - 5212332
Alignment:
Q  186 accattcaacaccactttttcaatgcccaacgctccacagcattttctct 235  Q
    |||||||||||||||||||| ||| |||||| ||||||| ||||||||||    
T  5212283 accattcaacaccacttttttaattcccaacactccacatcattttctct 5212332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 180 - 235
Target Start/End: Complemental strand, 18029585 - 18029529
Alignment:
Q  180 ttcaacaccattcaacacc-actttttcaatgcccaacgctccacagcattttctct 235  Q
    ||||||||||||| ||||| ||||||||||| |||||| ||||||| ||||||||||    
T  18029585 ttcaacaccattcgacacccactttttcaattcccaacactccacatcattttctct 18029529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 180 - 235
Target Start/End: Original strand, 36912402 - 36912458
Alignment:
Q  180 ttcaacaccattcaacacc-actttttcaatgcccaacgctccacagcattttctct 235  Q
    ||||||||||||||||||| ||||||||||| |||||| ||| ||| ||||||||||    
T  36912402 ttcaacaccattcaacacccactttttcaattcccaacactctacatcattttctct 36912458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 180 - 235
Target Start/End: Complemental strand, 38584980 - 38584924
Alignment:
Q  180 ttcaacaccattcaacac-cactttttcaatgcccaacgctccacagcattttctct 235  Q
    |||||||||||||||||| |||||||||||| |||||| ||||||  ||||||||||    
T  38584980 ttcaacaccattcaacacacactttttcaattcccaacactccacgtcattttctct 38584924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 179 - 235
Target Start/End: Original strand, 40283459 - 40283516
Alignment:
Q  179 tttcaacaccattcaaca-ccactttttcaatgcccaacgctccacagcattttctct 235  Q
    |||||| ||| ||||||| ||||||||||||| |||||| ||||||| ||||||||||    
T  40283459 tttcaatacctttcaacatccactttttcaattcccaacactccacatcattttctct 40283516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 179 - 235
Target Start/End: Complemental strand, 43524478 - 43524421
Alignment:
Q  179 tttcaacaccattcaaca-ccactttttcaatgcccaacgctccacagcattttctct 235  Q
    |||||| ||| ||||||| ||||||||||||| |||||| ||||||| ||||||||||    
T  43524478 tttcaatacccttcaacatccactttttcaattcccaacactccacatcattttctct 43524421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 235
Target Start/End: Complemental strand, 4625580 - 4625524
Alignment:
Q  180 ttcaacaccattcaacac-cactttttcaatgcccaacgctccacagcattttctct 235  Q
    |||||||||||||||||| |||||||||||| |||||| ||||| |  |||||||||    
T  4625580 ttcaacaccattcaacactcactttttcaattcccaacactccaaattattttctct 4625524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 235
Target Start/End: Complemental strand, 8610067 - 8610011
Alignment:
Q  180 ttcaacaccattcaacac-cactttttcaatgcccaacgctccacagcattttctct 235  Q
    |||||||||||||||||  |||||||||||| |||||| ||||| | ||||||||||    
T  8610067 ttcaacaccattcaacattcactttttcaattcccaacactccatatcattttctct 8610011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 235
Target Start/End: Complemental strand, 26632239 - 26632183
Alignment:
Q  180 ttcaacaccattcaacacc-actttttcaatgcccaacgctccacagcattttctct 235  Q
    ||||||||||||||||||| ||||||||||| |||||| | ||||  ||||||||||    
T  26632239 ttcaacaccattcaacacccactttttcaattcccaacacgccacgtcattttctct 26632183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 2e-17; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 178 - 235
Target Start/End: Original strand, 44651055 - 44651112
Alignment:
Q  178 ctttcaacaccattcaacaccactttttcaatgcccaacgctccacagcattttctct 235  Q
    |||||||||||||||||||||||||||||||| |||||| ||||||| ||||||||||    
T  44651055 ctttcaacaccattcaacaccactttttcaattcccaacactccacatcattttctct 44651112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 186 - 235
Target Start/End: Complemental strand, 643901 - 643852
Alignment:
Q  186 accattcaacaccactttttcaatgcccaacgctccacagcattttctct 235  Q
    |||||||||||||||||||||||| |||||| ||||||  ||||||||||    
T  643901 accattcaacaccactttttcaattcccaacactccacgtcattttctct 643852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 179 - 235
Target Start/End: Original strand, 29523685 - 29523742
Alignment:
Q  179 tttcaacaccattcaacacc-actttttcaatgcccaacgctccacagcattttctct 235  Q
    |||||||||| ||||||||| ||||||||||| |||||| ||||||| ||||||||||    
T  29523685 tttcaacacccttcaacacccactttttcaattcccaacactccacatcattttctct 29523742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 190 - 235
Target Start/End: Complemental strand, 44451345 - 44451300
Alignment:
Q  190 ttcaacaccactttttcaatgcccaacgctccacagcattttctct 235  Q
    |||||||||||||||||||| |||||| ||||||| ||||||||||    
T  44451345 ttcaacaccactttttcaattcccaacactccacatcattttctct 44451300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 235
Target Start/End: Original strand, 31468122 - 31468172
Alignment:
Q  186 accattcaacacc-actttttcaatgcccaacgctccacagcattttctct 235  Q
    ||||||||||||| ||||||||||| |||||| ||||||| ||||||||||    
T  31468122 accattcaacacccactttttcaattcccaacactccacatcattttctct 31468172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 235
Target Start/End: Original strand, 41542311 - 41542369
Alignment:
Q  178 ctttcaacaccattcaaca-ccactttttcaatgcccaacgctccacagcattttctct 235  Q
    ||||||||| ||||||||| ||||||||||||| |||||| ||||||| ||| ||||||    
T  41542311 ctttcaacatcattcaacatccactttttcaattcccaacactccacatcatattctct 41542369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 235
Target Start/End: Original strand, 45239127 - 45239177
Alignment:
Q  186 accattcaacacc-actttttcaatgcccaacgctccacagcattttctct 235  Q
    ||||||||||||| ||||||||||| |||||| ||||||| ||||||||||    
T  45239127 accattcaacacccactttttcaattcccaacactccacatcattttctct 45239177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 183 - 235
Target Start/End: Original strand, 8464085 - 8464138
Alignment:
Q  183 aacaccattcaaca-ccactttttcaatgcccaacgctccacagcattttctct 235  Q
    |||||||||||||| ||||||||||||| | |||| ||||||| ||||||||||    
T  8464085 aacaccattcaacatccactttttcaattctcaacactccacatcattttctct 8464138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 235
Target Start/End: Complemental strand, 2478414 - 2478358
Alignment:
Q  180 ttcaacaccattcaacacc-actttttcaatgcccaacgctccacagcattttctct 235  Q
    ||||||| | ||||||||| ||||||||||| |||||| ||||||| ||||||||||    
T  2478414 ttcaacaaccttcaacacccactttttcaattcccaacactccacatcattttctct 2478358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 235
Target Start/End: Original strand, 44334272 - 44334328
Alignment:
Q  180 ttcaacaccattcaaca-ccactttttcaatgcccaacgctccacagcattttctct 235  Q
    ||||| ||||||||||| ||||||||||||| | |||| ||||||| ||||||||||    
T  44334272 ttcaataccattcaacatccactttttcaattctcaacactccacatcattttctct 44334328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 235
Target Start/End: Complemental strand, 48388194 - 48388138
Alignment:
Q  180 ttcaacaccattcaacacc-actttttcaatgcccaacgctccacagcattttctct 235  Q
    ||||||| | ||||||||| ||||||||||| |||||| ||||||| ||||||||||    
T  48388194 ttcaacaaccttcaacacccactttttcaattcccaacactccacatcattttctct 48388138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 180 - 235
Target Start/End: Original strand, 22191207 - 22191262
Alignment:
Q  180 ttcaacaccattcaacaccactttttcaatgcccaacgctccacagcattttctct 235  Q
    ||||||||||||||||||||||||||||||  ||||| ||||||| ||||||||||    
T  22191207 ttcaacaccattcaacaccactttttcaatttccaacactccacatcattttctct 22191262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 186 - 235
Target Start/End: Original strand, 48984900 - 48984949
Alignment:
Q  186 accattcaacaccactttttcaatgcccaacgctccacagcattttctct 235  Q
    ||||||||||||||||||||||||  ||||||||||||| ||||||||||    
T  48984900 accattcaacaccactttttcaatttccaacgctccacatcattttctct 48984949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 186 - 235
Target Start/End: Original strand, 21654839 - 21654888
Alignment:
Q  186 accattcaacaccactttttcaatgcccaacgctccacagcattttctct 235  Q
    ||||||||||||||||||||||||  ||||| ||||||| ||||||||||    
T  21654839 accattcaacaccactttttcaatttccaacactccacatcattttctct 21654888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 180 - 235
Target Start/End: Complemental strand, 22737681 - 22737625
Alignment:
Q  180 ttcaacaccattcaacacc-actttttcaatgcccaacgctccacagcattttctct 235  Q
    ||||||| ||||||||||| ||||||||||| |||||| ||||||| ||||||||||    
T  22737681 ttcaacagcattcaacacccactttttcaattcccaacactccacatcattttctct 22737625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 186 - 235
Target Start/End: Complemental strand, 30630893 - 30630844
Alignment:
Q  186 accattcaacaccactttttcaatgcccaacgctccacagcattttctct 235  Q
    |||||||||||||||||||| ||| |||||| |||||||  |||||||||    
T  30630893 accattcaacaccacttttttaattcccaacactccacattattttctct 30630844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 180 - 235
Target Start/End: Complemental strand, 25832809 - 25832754
Alignment:
Q  180 ttcaacaccattcaacaccactttttcaatgcccaacgctccacagcattttctct 235  Q
    |||||||||||||||||||||||||||||| |||||| || |||| ||||||||||    
T  25832809 ttcaacaccattcaacaccactttttcaattcccaacacttcacatcattttctct 25832754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 180 - 235
Target Start/End: Original strand, 41890522 - 41890577
Alignment:
Q  180 ttcaacaccattcaacaccactttttcaatgcccaacgctccacagcattttctct 235  Q
    ||||||||||||||||| |||||||||||| |||||| ||||||| ||||||||||    
T  41890522 ttcaacaccattcaacatcactttttcaattcccaacactccacatcattttctct 41890577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 185 - 235
Target Start/End: Complemental strand, 42601585 - 42601535
Alignment:
Q  185 caccattcaacaccactttttcaatgcccaacgctccacagcattttctct 235  Q
    ||||||||||||||||||||||||| |||||| ||||||| ||||||||||    
T  42601585 caccattcaacaccactttttcaattcccaacactccacatcattttctct 42601535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 178 - 235
Target Start/End: Original strand, 42601746 - 42601804
Alignment:
Q  178 ctttcaacaccattcaacacc-actttttcaatgcccaacgctccacagcattttctct 235  Q
    ||||||||||||||||||||| ||||||||||| |||||| ||||||| ||||||||||    
T  42601746 ctttcaacaccattcaacacccactttttcaattcccaacactccacatcattttctct 42601804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 186 - 235
Target Start/End: Original strand, 33934985 - 33935034
Alignment:
Q  186 accattcaacaccactttttcaatgcccaacgctccacagcattttctct 235  Q
    |||||||||||||||||||||||| |||||| ||||||| ||||||||||    
T  33934985 accattcaacaccactttttcaattcccaacactccacatcattttctct 33935034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 186 - 235
Target Start/End: Original strand, 51427094 - 51427143
Alignment:
Q  186 accattcaacaccactttttcaatgcccaacgctccacagcattttctct 235  Q
    |||||||||||||||||||||||| |||||| ||||||| ||||||||||    
T  51427094 accattcaacaccactttttcaattcccaacactccacatcattttctct 51427143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 180 - 235
Target Start/End: Complemental strand, 46573011 - 46572955
Alignment:
Q  180 ttcaacaccattcaacacc-actttttcaatgcccaacgctccacagcattttctct 235  Q
    ||||||| ||||||||||| ||||||||||| |||||| ||||||| ||||||||||    
T  46573011 ttcaacaacattcaacacccactttttcaattcccaacactccacatcattttctct 46572955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 235
Target Start/End: Original strand, 17466508 - 17466558
Alignment:
Q  186 accattcaacacc-actttttcaatgcccaacgctccacagcattttctct 235  Q
    ||||||||||||| ||||||||||| |||||| ||||||| ||||||||||    
T  17466508 accattcaacacccactttttcaattcccaacactccacatcattttctct 17466558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 235
Target Start/End: Complemental strand, 25790855 - 25790805
Alignment:
Q  186 accattcaacacc-actttttcaatgcccaacgctccacagcattttctct 235  Q
    ||||||||||||| ||||||||||| |||||| ||||||| ||||||||||    
T  25790855 accattcaacacccactttttcaattcccaacactccacatcattttctct 25790805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 235
Target Start/End: Original strand, 47144166 - 47144216
Alignment:
Q  186 accattcaacacc-actttttcaatgcccaacgctccacagcattttctct 235  Q
    ||||||||||||| ||||||||||| |||||| ||||||| ||||||||||    
T  47144166 accattcaacacccactttttcaattcccaacactccacatcattttctct 47144216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 235
Target Start/End: Complemental strand, 49823242 - 49823200
Alignment:
Q  193 aacaccactttttcaatgcccaacgctccacagcattttctct 235  Q
    ||||||||||||||||| |||||| ||||||| ||||||||||    
T  49823242 aacaccactttttcaattcccaacactccacatcattttctct 49823200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 179 - 235
Target Start/End: Original strand, 12974654 - 12974711
Alignment:
Q  179 tttcaacaccattcaacacc-actttttcaatgcccaacgctccacagcattttctct 235  Q
    |||||| ||| ||||||||| ||||||||||| |||||| ||||||| ||||||||||    
T  12974654 tttcaatacccttcaacacccactttttcaattcccaacactccacatcattttctct 12974711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 179 - 235
Target Start/End: Complemental strand, 26165641 - 26165584
Alignment:
Q  179 tttcaacaccattcaaca-ccactttttcaatgcccaacgctccacagcattttctct 235  Q
    |||||| ||| ||||||| ||||||||||||| |||||| ||||||| ||||||||||    
T  26165641 tttcaatacccttcaacatccactttttcaattcccaacactccacatcattttctct 26165584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 235
Target Start/End: Original strand, 4045967 - 4046023
Alignment:
Q  180 ttcaacaccattcaaca-ccactttttcaatgcccaacgctccacagcattttctct 235  Q
    ||||||| | ||||||| ||||||||||||| |||||| ||||||| ||||||||||    
T  4045967 ttcaacaaccttcaacatccactttttcaattcccaacactccacatcattttctct 4046023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 235
Target Start/End: Complemental strand, 6048782 - 6048726
Alignment:
Q  180 ttcaacaccattcaacacc-actttttcaatgcccaacgctccacagcattttctct 235  Q
    ||||||| | ||||||||| ||||||||||| |||||| ||||||| ||||||||||    
T  6048782 ttcaacaaccttcaacacccactttttcaattcccaacactccacatcattttctct 6048726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 235
Target Start/End: Complemental strand, 25450712 - 25450664
Alignment:
Q  188 cattcaacacc-actttttcaatgcccaacgctccacagcattttctct 235  Q
    ||||||||||| | ||||||||| |||||||||||||| ||||||||||    
T  25450712 cattcaacacccattttttcaattcccaacgctccacatcattttctct 25450664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 235
Target Start/End: Original strand, 29701669 - 29701725
Alignment:
Q  180 ttcaacaccattcaacacc-actttttcaatgcccaacgctccacagcattttctct 235  Q
    ||||||| | ||||||||| ||||||||||| |||||| ||||||| ||||||||||    
T  29701669 ttcaacaaccttcaacacccactttttcaattcccaacactccacatcattttctct 29701725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 235
Target Start/End: Complemental strand, 32120524 - 32120468
Alignment:
Q  180 ttcaacaccattcaacacc-actttttcaatgcccaacgctccacagcattttctct 235  Q
    ||||||| | ||||||||| ||||||||||| |||||| ||||||| ||||||||||    
T  32120524 ttcaacaaccttcaacacccactttttcaattcccaacactccacatcattttctct 32120468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 235
Target Start/End: Original strand, 44084296 - 44084352
Alignment:
Q  180 ttcaacaccattcaacacc-actttttcaatgcccaacgctccacagcattttctct 235  Q
    ||||||| | ||||||||| ||||||||||| |||||| ||||||| ||||||||||    
T  44084296 ttcaacaaccttcaacacccactttttcaattcccaacactccacatcattttctct 44084352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 235
Target Start/End: Complemental strand, 51999323 - 51999267
Alignment:
Q  180 ttcaacaccattcaacacc-actttttcaatgcccaacgctccacagcattttctct 235  Q
    ||||||| | ||||||||| ||||||||||| |||||| ||||||| ||||||||||    
T  51999323 ttcaacaaccttcaacacccactttttcaattcccaacactccacatcattttctct 51999267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 185 - 235
Target Start/End: Complemental strand, 6380569 - 6380519
Alignment:
Q  185 caccattcaacaccactttttcaatgcccaacgctccacagcattttctct 235  Q
    ||||||||||||||||||||||||| |||||| ||||||| ||||||||||    
T  6380569 caccattcaacaccactttttcaattcccaacactccacatcattttctct 6380519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 235
Target Start/End: Original strand, 631509 - 631559
Alignment:
Q  186 accattcaacacc-actttttcaatgcccaacgctccacagcattttctct 235  Q
    ||||||||||||| ||||||||||| |||||| ||||||| ||||||||||    
T  631509 accattcaacacccactttttcaattcccaacactccacatcattttctct 631559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 235
Target Start/End: Complemental strand, 29428598 - 29428548
Alignment:
Q  186 accattcaaca-ccactttttcaatgcccaacgctccacagcattttctct 235  Q
    ||||||||||| ||||||||||||| |||||| ||||||| ||||||||||    
T  29428598 accattcaacatccactttttcaattcccaacactccacatcattttctct 29428548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 235
Target Start/End: Original strand, 8660544 - 8660600
Alignment:
Q  180 ttcaacaccattcaacacc-actttttcaatgcccaacgctccacagcattttctct 235  Q
    ||||||| | ||||||||| ||||||||||| |||||| ||||||| ||||||||||    
T  8660544 ttcaacaaccttcaacacccactttttcaattcccaacactccacatcattttctct 8660600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.00000000008; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 185 - 235
Target Start/End: Complemental strand, 9074305 - 9074255
Alignment:
Q  185 caccattcaacaccactttttcaatgcccaacgctccacagcattttctct 235  Q
    ||||||||||||||||||||| ||| |||||| ||||||| ||||||||||    
T  9074305 caccattcaacaccacttttttaattcccaacactccacatcattttctct 9074255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 183 - 235
Target Start/End: Original strand, 37245491 - 37245544
Alignment:
Q  183 aacaccattcaacacc-actttttcaatgcccaacgctccacagcattttctct 235  Q
    |||||||||||||||| ||||||||||| |||||| ||||||| ||||||||||    
T  37245491 aacaccattcaacacccactttttcaattcccaacactccacatcattttctct 37245544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 180 - 235
Target Start/End: Complemental strand, 14152154 - 14152098
Alignment:
Q  180 ttcaacaccattcaacacc-actttttcaatgcccaacgctccacagcattttctct 235  Q
    ||||||| ||||||||||| ||||||||||| |||||| ||||||| ||||||||||    
T  14152154 ttcaacaacattcaacacccactttttcaattcccaacactccacatcattttctct 14152098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 235
Target Start/End: Original strand, 8852050 - 8852100
Alignment:
Q  186 accattcaacacc-actttttcaatgcccaacgctccacagcattttctct 235  Q
    ||||||||||||| ||||||||||| |||||| ||||||| ||||||||||    
T  8852050 accattcaacacccactttttcaattcccaacactccacatcattttctct 8852100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 235
Target Start/End: Original strand, 12855012 - 12855062
Alignment:
Q  186 accattcaacacc-actttttcaatgcccaacgctccacagcattttctct 235  Q
    ||||||||||||| ||||||||||| |||||| ||||||| ||||||||||    
T  12855012 accattcaacacccactttttcaattcccaacactccacatcattttctct 12855062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 235
Target Start/End: Original strand, 24997073 - 24997123
Alignment:
Q  186 accattcaacacc-actttttcaatgcccaacgctccacagcattttctct 235  Q
    ||||||||||||| ||||||||||| |||||| ||||||| ||||||||||    
T  24997073 accattcaacacccactttttcaattcccaacactccacatcattttctct 24997123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 235
Target Start/End: Complemental strand, 30822664 - 30822614
Alignment:
Q  186 accattcaacacc-actttttcaatgcccaacgctccacagcattttctct 235  Q
    ||||||||||||| ||||||||||| |||||| ||||||| ||||||||||    
T  30822664 accattcaacacccactttttcaattcccaacactccacatcattttctct 30822614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 179 - 235
Target Start/End: Original strand, 17485803 - 17485860
Alignment:
Q  179 tttcaacaccattcaaca-ccactttttcaatgcccaacgctccacagcattttctct 235  Q
    |||||| ||| ||||||| ||||||||||||| |||||| ||||||| ||||||||||    
T  17485803 tttcaatacccttcaacatccactttttcaattcccaacactccacatcattttctct 17485860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 235
Target Start/End: Complemental strand, 7588591 - 7588535
Alignment:
Q  180 ttcaacaccattcaacacc-actttttcaatgcccaacgctccacagcattttctct 235  Q
    ||||||| | ||||||||| ||||||||||| |||||| ||||||| ||||||||||    
T  7588591 ttcaacaaccttcaacacccactttttcaattcccaacactccacatcattttctct 7588535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 235
Target Start/End: Complemental strand, 22351701 - 22351645
Alignment:
Q  180 ttcaacaccattcaacacc-actttttcaatgcccaacgctccacagcattttctct 235  Q
    ||||||| | ||||||||| ||||||||||| |||||| ||||||| ||||||||||    
T  22351701 ttcaacaaccttcaacacccactttttcaattcccaacactccacatcattttctct 22351645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 235
Target Start/End: Original strand, 43021728 - 43021784
Alignment:
Q  180 ttcaacaccattcaacacc-actttttcaatgcccaacgctccacagcattttctct 235  Q
    ||||||| | ||||||||| ||||||||||| |||||| ||||||| ||||||||||    
T  43021728 ttcaacaaccttcaacacccactttttcaattcccaacactccacatcattttctct 43021784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 186 - 235
Target Start/End: Complemental strand, 53184175 - 53184126
Alignment:
Q  186 accattcaacaccactttttcaatgcccaacgctccacagcattttctct 235  Q
    |||||||||||||||||||||||| |||||| || |||| ||||||||||    
T  53184175 accattcaacaccactttttcaattcccaacacttcacatcattttctct 53184126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 235
Target Start/End: Complemental strand, 46917591 - 46917541
Alignment:
Q  186 accattcaacacc-actttttcaatgcccaacgctccacagcattttctct 235  Q
    ||||||||||||| ||||||||||| |||||| ||||||| ||||||||||    
T  46917591 accattcaacacccactttttcaattcccaacactccacatcattttctct 46917541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 186 - 235
Target Start/End: Complemental strand, 31848853 - 31848804
Alignment:
Q  186 accattcaacaccactttttcaatgcccaacgctccacagcattttctct 235  Q
    |||||||||||||| |||||||||  ||||| ||||||| ||||||||||    
T  31848853 accattcaacaccattttttcaatttccaacactccacatcattttctct 31848804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 179 - 235
Target Start/End: Complemental strand, 45081499 - 45081442
Alignment:
Q  179 tttcaacaccattcaacacc-actttttcaatgcccaacgctccacagcattttctct 235  Q
    |||||| ||| ||||||||| ||||||||||| |||||| ||||||| ||||||||||    
T  45081499 tttcaatacccttcaacacccactttttcaattcccaacactccacatcattttctct 45081442  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 235
Target Start/End: Complemental strand, 3533393 - 3533337
Alignment:
Q  180 ttcaacaccattcaacacc-actttttcaatgcccaacgctccacagcattttctct 235  Q
    ||||||| | ||||||||| ||||||||||| |||||| ||||||| ||||||||||    
T  3533393 ttcaacaaccttcaacacccactttttcaattcccaacactccacatcattttctct 3533337  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 235
Target Start/End: Complemental strand, 3618539 - 3618483
Alignment:
Q  180 ttcaacaccattcaacacc-actttttcaatgcccaacgctccacagcattttctct 235  Q
    ||||||| | ||||||||| ||||||||||| |||||| ||||||| ||||||||||    
T  3618539 ttcaacaaccttcaacacccactttttcaattcccaacactccacatcattttctct 3618483  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 235
Target Start/End: Original strand, 6290586 - 6290642
Alignment:
Q  180 ttcaacaccattcaacacc-actttttcaatgcccaacgctccacagcattttctct 235  Q
    ||||||| | ||||||||| ||||||||||| |||||| ||||||| ||||||||||    
T  6290586 ttcaacaaccttcaacacccactttttcaattcccaacactccacatcattttctct 6290642  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 235
Target Start/End: Complemental strand, 34199355 - 34199299
Alignment:
Q  180 ttcaacaccattcaaca-ccactttttcaatgcccaacgctccacagcattttctct 235  Q
    ||||||| | ||||||| ||||||||||||| |||||| ||||||| ||||||||||    
T  34199355 ttcaacaaccttcaacatccactttttcaattcccaacactccacatcattttctct 34199299  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 235
Target Start/End: Original strand, 40721021 - 40721077
Alignment:
Q  180 ttcaacaccattcaacacc-actttttcaatgcccaacgctccacagcattttctct 235  Q
    |||||||  |||||||||| ||||||||||| |||||| ||||||| ||||||||||    
T  40721021 ttcaacaatattcaacacccactttttcaattcccaacactccacatcattttctct 40721077  T

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Target: scaffold0012 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 231
Target Start/End: Original strand, 123999 - 124053
Alignment:
Q  178 ctttcaacaccattcaaca-ccactttttcaatgcccaacgctccacagcatttt 231  Q
    ||||||||||||||||||| |||||||||||||  ||||| ||||||| ||||||    
T  123999 ctttcaacaccattcaacatccactttttcaatttccaacactccacatcatttt 124053  T

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