View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10862_low_1 (Length: 622)

Name: NF10862_low_1
Description: NF10862
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10862_low_1
NF10862_low_1
[»] chr8 (3 HSPs)
chr8 (26-450)||(13279974-13280395)
chr8 (503-605)||(13276578-13276683)
chr8 (453-495)||(13279909-13279951)
[»] chr6 (2 HSPs)
chr6 (236-300)||(32786611-32786676)
chr6 (235-297)||(2753673-2753737)
[»] chr3 (3 HSPs)
chr3 (235-306)||(6891308-6891380)
chr3 (235-290)||(43615981-43616038)
chr3 (235-300)||(4221355-4221422)
[»] chr1 (1 HSPs)
chr1 (235-306)||(171161-171233)
[»] chr7 (1 HSPs)
chr7 (235-290)||(19362705-19362762)
[»] chr2 (1 HSPs)
chr2 (235-297)||(42755733-42755795)
[»] chr5 (1 HSPs)
chr5 (236-306)||(4306880-4306952)
[»] chr4 (1 HSPs)
chr4 (236-297)||(34770542-34770605)


Alignment Details
Target: chr8 (Bit Score: 354; Significance: 0; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 26 - 450
Target Start/End: Complemental strand, 13280395 - 13279974
Alignment:
Q  26 caattcttaattggaattgaagcaaacaacatgtagaaggggtgtttatggaaagatgttaaacattcaagggctatcaacatgcttgatgagattgagc 125  Q
    |||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13280395 caattcttaattggaattgaagcaaacaacatgtagaaggggtgtc-atggaaagatgttaaacattcaagggctatcaacatgcttgatgagattgagc 13280297  T
Q  126 aaggaatgttgagtcgatcagcttagagaggcggatgcattaacattcattgatcggtctagagacgaaatggcaagaaaactcaaggttaaatggagag 225  Q
    |||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13280296 aaggaatgttgagttgatcagcttaaagaggcggatgcattaacattcattgatcggtctagagacgaaatggcaagaaaactcaaggttaaatggagag 13280197  T
Q  226 gcgcatgcggtggcggattttgagttattttgttgggtatcaaacttttatgaaatatatattaaactgtttcaaaaattagagaaaagtattaagtggc 325  Q
    ||| |||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  13280196 gcgtatgcagtggcggattttgagttattttgttgggtaccaaacttttatgaaatatatattaaactgtttcaaaaattagggaaaagtattaagtggc 13280097  T
Q  326 ccacagtgattaaatttgcttgaaagcagaatggtggttgcaagtttgaatccccaacaactaagaattcttaatcataatatgcctaatgttgtatata 425  Q
    |  |||||||||||||||||||||| ||||||||| |||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  13280096 c--cagtgattaaatttgcttgaaaacagaatggtagttgcaagttcgaatccccaacaactaagaattattaatcataatatgcctaatgttgtatata 13279999  T
Q  426 tagaaaacttgggggtcccatgttt 450  Q
    ||||||||||| |||| ||||||||    
T  13279998 tagaaaacttgcgggtgccatgttt 13279974  T

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Target: chr8; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 503 - 605
Target Start/End: Complemental strand, 13276683 - 13276578
Alignment:
Q  503 ttacaaggtaaaaggcataatg----tacacatttgaaaattaaagtggagaaaacttaacacagggtgtagtcttccactggtgggactagaaagagac 598  Q
    ||||||||||||||||||||||    |||| ||||  || |||| ||||||||| ||||||| || ||| ||||||||||| ||||||||||||||||||    
T  13276683 ttacaaggtaaaaggcataatggatgtacatatttataagttaaggtggagaaagcttaacatagagtg-agtcttccactagtgggactagaaagagac 13276585  T
Q  599 taccaat 605  Q
    |||||||    
T  13276584 taccaat 13276578  T

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Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 453 - 495
Target Start/End: Complemental strand, 13279951 - 13279909
Alignment:
Q  453 tgccaccagacgcatgcaagaatactcatgagcaacctgagag 495  Q
    ||||||||||||||||||||||||||||| |||||||||||||    
T  13279951 tgccaccagacgcatgcaagaatactcataagcaacctgagag 13279909  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000009; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 236 - 300
Target Start/End: Original strand, 32786611 - 32786676
Alignment:
Q  236 tggcggattttgagttattttgtt-gggtatcaaacttttatgaaatatatattaaactgtttcaa 300  Q
    |||||||| |||||||| |||||| |||| |||||||| |||| |||||||||||||| |||||||    
T  32786611 tggcggatcttgagttaatttgttagggtgtcaaacttctatggaatatatattaaacggtttcaa 32786676  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 235 - 297
Target Start/End: Complemental strand, 2753737 - 2753673
Alignment:
Q  235 gtggcggattttgagttattttgttggg--tatcaaacttttatgaaatatatattaaactgttt 297  Q
    ||||||||| |||||||||||| |||||  || ||||  ||||||||||||||||||| ||||||    
T  2753737 gtggcggatcttgagttattttcttgggggtaccaaaagtttatgaaatatatattaagctgttt 2753673  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000004; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 235 - 306
Target Start/End: Complemental strand, 6891380 - 6891308
Alignment:
Q  235 gtggcggattttgagttattttgttggg-tatcaaacttttatgaaatatatattaaactgtttcaaaaatta 306  Q
    ||||||||| |||||||||||| | ||| || |||| || ||||||||||||||||| |||||| ||||||||    
T  6891380 gtggcggatcttgagttattttctcggggtaccaaaattctatgaaatatatattaagctgtttgaaaaatta 6891308  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 235 - 290
Target Start/End: Complemental strand, 43616038 - 43615981
Alignment:
Q  235 gtggcggattttgagttattttgttggg--tatcaaacttttatgaaatatatattaa 290  Q
    ||||||||| |||||||| |||||||||  | ||||||||||||| ||||||||||||    
T  43616038 gtggcggatcttgagttaatttgttgggggtgtcaaacttttatggaatatatattaa 43615981  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 235 - 300
Target Start/End: Complemental strand, 4221422 - 4221355
Alignment:
Q  235 gtggcggattttgagttattttgttgggtat--caaacttttatgaaatatatattaaactgtttcaa 300  Q
    ||||||||| |||| ||| |||||||||  |  ||||||| ||||||||||||||||||| |||||||    
T  4221422 gtggcggatcttgaattaatttgttgggggtgccaaacttctatgaaatatatattaaacagtttcaa 4221355  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 235 - 306
Target Start/End: Complemental strand, 171233 - 171161
Alignment:
Q  235 gtggcggattttgagttattttgttggg-tatcaaacttttatgaaatatatattaaactgtttcaaaaatta 306  Q
    ||||||||| |||||||| ||||||||| |  ||||| |||||| ||||||||||||| ||||||||| ||||    
T  171233 gtggcggatcttgagttaatttgttgggatgccaaacctttatggaatatatattaaattgtttcaaatatta 171161  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 235 - 290
Target Start/End: Complemental strand, 19362762 - 19362705
Alignment:
Q  235 gtggcggattttgagttattttgtt--gggtatcaaacttttatgaaatatatattaa 290  Q
    ||||||||| |||||||||||||||  ||||  |||||||||||| ||||||||||||    
T  19362762 gtggcggatcttgagttattttgttgggggtgccaaacttttatggaatatatattaa 19362705  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 235 - 297
Target Start/End: Original strand, 42755733 - 42755795
Alignment:
Q  235 gtggcggattttgagttattttgttgggtatcaaacttttatgaaatatatattaaactgttt 297  Q
    ||||||||| |||||||||||| |||| || |||| || ||| |||||||||||| |||||||    
T  42755733 gtggcggatcttgagttatttttttggataccaaaattatataaaatatatattatactgttt 42755795  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 236 - 306
Target Start/End: Original strand, 4306880 - 4306952
Alignment:
Q  236 tggcggattttgagttattttgttggg--tatcaaacttttatgaaatatatattaaactgtttcaaaaatta 306  Q
    |||||||| |||||||||||| | |||  || |||| || |||||||||||||||||||||||| ||| ||||    
T  4306880 tggcggatcttgagttattttctcgggggtaccaaaattctatgaaatatatattaaactgtttgaaagatta 4306952  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 236 - 297
Target Start/End: Original strand, 34770542 - 34770605
Alignment:
Q  236 tggcggattttgagttattttgttggg--tatcaaacttttatgaaatatatattaaactgttt 297  Q
    |||||||| |||||||||||| | |||  ||||||| || ||||||||||||||||| ||||||    
T  34770542 tggcggatcttgagttattttctcggggatatcaaaattctatgaaatatatattaagctgttt 34770605  T

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