View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10862_low_12 (Length: 351)
Name: NF10862_low_12
Description: NF10862
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10862_low_12 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 7 - 351
Target Start/End: Complemental strand, 1456079 - 1455737
Alignment:
| Q |
7 |
agatactgatgagttaaaacagtgttgggttaagccgtctggaggtaatattcagttttaaattttgcaacttttcaaggaagccatatgcatgtggatt |
106 |
Q |
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| T |
1456079 |
agatactgatgagttaaaacagtgttgggttaagccgtctggaggtaatattcagttttaaattttgcaacttttcaaggaagccatatgcatgtggatt |
1455980 |
T |
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| Q |
107 |
gtatttttcttctttcattattaattaatattttgtcgatatggttggcagacgaagtggagcagacggacgggttcgttaccttttcactaaccaatgg |
206 |
Q |
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| T |
1455979 |
gtatttttcttctttcattattaattaatattttgtcgatatggttggcagacgaagtggagcagacggacgggttcgttaccttttcactaaccaatgg |
1455880 |
T |
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| Q |
207 |
tccagagtaccacttatctcaggtaaacgattcaatcattgtcattgacttatcaaaatgagga--nnnnnnnnnggtattagtgatgtaagatattgcg |
304 |
Q |
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| T |
1455879 |
tccagagtaccacttatctcaggtaaacgattcaatcattgtcattgacttatcaaaatgaggatttttttttttggtattagtgatgtaagatattgcg |
1455780 |
T |
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| Q |
305 |
gctgtttctcaaacaccaaagatattttcccttagataatttccttc |
351 |
Q |
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| T |
1455779 |
gctgttt----aacaccaaagatattttcccttagataatttccttc |
1455737 |
T |
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