View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10862_low_17 (Length: 338)
Name: NF10862_low_17
Description: NF10862
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10862_low_17 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 1 - 321
Target Start/End: Original strand, 5950981 - 5951301
Alignment:
| Q |
1 |
tacattcctagcagaacctgcaggaaaagaagaataggaaacgttgctgcggttaaataggacgaagcatgtagtcatagagatttaaaacaaaattttc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5950981 |
tacattcctagcagaacctgcaggaaaagaagaataggaaacgttgctgcggttaaataggacgaagcatgtagtcatagagatttaaaacaaaattttc |
5951080 |
T |
|
| Q |
101 |
tctacaacgaaccatatatagctttgagtaataagaaaacatcaggtaccgttcttgtcaacaatctgcactttgagaaagagagcatcaccgtcaggat |
200 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5951081 |
tctacaacgaaccagatatagctttgagtaataagaaaacatcaggtaccgttcttgtcaacaatctgcactttgagaaagagagcatcaccgtcaggat |
5951180 |
T |
|
| Q |
201 |
ttcgcttcctagttattgacattgaagccctagctgaatcgcccctcagttgaagtttatccatttcagtgtagtttaaaaatggatcctgcataccact |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5951181 |
ttcgcttcctagttattgacattgaagccctagctgaatcgcccctcagttgaagtttatccatttcagtgtagtttaaaaatggatcctgcataccact |
5951280 |
T |
|
| Q |
301 |
tactgttatcgatgattcatc |
321 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
5951281 |
tactgttatcgatgattcatc |
5951301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 204 - 283
Target Start/End: Original strand, 18077537 - 18077616
Alignment:
| Q |
204 |
gcttcctagttattgacattgaagccctagctgaatcgcccctcagttgaagtttatccatttcagtgtagtttaaaaat |
283 |
Q |
| |
|
|||||| | ||||||||||||||| |||| |||||||| |||| ||||||||||||||| ||||||| ||||||||| |
|
|
| T |
18077537 |
gcttcccaattattgacattgaagtcctaagtgaatcgcttctcaattgaagtttatccatcacagtgtaatttaaaaat |
18077616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University