View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10862_low_18 (Length: 337)
Name: NF10862_low_18
Description: NF10862
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10862_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 22 - 324
Target Start/End: Complemental strand, 53454858 - 53454556
Alignment:
| Q |
22 |
aatagccttaaatatagttaattgttgcgaagaaagaaaatggtttattggtccatgtaaaaggtgttgggtactagcacacaccttttaatgttatctc |
121 |
Q |
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| T |
53454858 |
aatagccttaaatatagttaattgttgcgaagaaagaaaatggtttattggtccatgtaaaaggtgttgggtactagcacacaccttttaatgttatctc |
53454759 |
T |
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| Q |
122 |
aaggccatagtttatctgagaaggaattaagagggatagtctgctgtttgctctcttaatgccaattgaatatataactattaatgttatctcaaggcca |
221 |
Q |
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| T |
53454758 |
aaggccatagtttatctgagaaggaattaagagggatagtctgctctttgctctcttaatgccaattgaatctataattattaatgttatctcaaggcca |
53454659 |
T |
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| Q |
222 |
tagcctagtggtcaacctttcttgcagaatttaggccctgagttagttcccacctgtgccaaaagaatattttatgcatttgttagttctattttttcag |
321 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
53454658 |
tagcctagtggtcaacctttcttgcagaatttaggccctgagttagttaccacctgtgccaaaagaatattttatgcatttgttggttctattttttcag |
53454559 |
T |
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| Q |
322 |
tct |
324 |
Q |
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||| |
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| T |
53454558 |
tct |
53454556 |
T |
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