View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10862_low_19 (Length: 334)
Name: NF10862_low_19
Description: NF10862
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10862_low_19 |
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Alignment Details
Target: chr6 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 17 - 305
Target Start/End: Complemental strand, 182442 - 182161
Alignment:
| Q |
17 |
atatcagagatttatatataggagtgaaagagttttttctttcttcttctacctatatggaaagtaagtgtggttaatgttaatatttatggtcaaaaac |
116 |
Q |
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| T |
182442 |
atatcagagatttatatataggagtgaaagagttgtttctttcttcttctacctatatggaaagtaagtgtggttaatgttaatatttatggtcaaaaac |
182343 |
T |
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| Q |
117 |
caagttgcatattatattaataataataaatttaaaattgtgcttctgcacacagaatgagaatgacagaattgaagagtgtgttgtttgttagttagtt |
216 |
Q |
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| T |
182342 |
caagttgcatatta--------ataataaatttaaaattgtgcttctgcacacagaatgaggatgacagaattgaagagtgtgttgtttgttagttagtt |
182251 |
T |
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| Q |
217 |
gtaatattcaattaatcacgtaccattaaatcattgttctcgacatcaatcata-tttgtacacttcatatttttcaatattcaatcaac |
305 |
Q |
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| T |
182250 |
gtaatattcaattaatcacgtaccattaaatcattgttgtcgacatcaatgatattttgtacacttcatatttttcaatattcaatcaac |
182161 |
T |
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