View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10862_low_2 (Length: 546)
Name: NF10862_low_2
Description: NF10862
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10862_low_2 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 490; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 490; E-Value: 0
Query Start/End: Original strand, 13 - 546
Target Start/End: Complemental strand, 46400696 - 46400165
Alignment:
| Q |
13 |
cagagataaaacgtttaagcgataatcaaatttgtatagaattctgctttcgaaacttgatttaattttttaacgaaactgtgtataagttaattcgcca |
112 |
Q |
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| T |
46400696 |
cagagataaaacgtttaagcgataatcaaatttgtatagaattctgctttcgaaacttgatttaattgtttaacgaaactgt--ataagttaattcgcca |
46400599 |
T |
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| Q |
113 |
aaattttcgagaaatcggagctattataacagaggatgaatgttatatagaattctaatcgatttgctatgtagagaagtgaattgaaaacgaaaagtaa |
212 |
Q |
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| T |
46400598 |
aaattttcgagaaatcggagctattataacagaggatgaatgttatatagaattctaatcgatttgctatgtagagaagtgaattgaaaacgaaaagtaa |
46400499 |
T |
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| Q |
213 |
atcaaacgaaaatgaaatgcagagatcgnnnnnnngaaagttgatctagaaaaacgaaaaacagagtttcgagaaattacgcttgtcgatagcttcgaag |
312 |
Q |
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| T |
46400498 |
atcaaacgaaaatgaaatgcagagatcgtttttttgaacgttgatctagaaaaacgaaaaacagagtttcgagaaattacgcttgtcgatagcttcgaag |
46400399 |
T |
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| Q |
313 |
aggtcttcttcatcttccatgtcttcgcgttcaaccagctgcatctggccgcttgattcttcggatctgaaaacgaaaacggaaaagataaattatgaac |
412 |
Q |
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| T |
46400398 |
aggtcttcttcatcttccatgtcttcgcgttcaaccagctgcatctggccgcttgattcttcggatctgaaaacgaaaacggaaaagataaattatgaac |
46400299 |
T |
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| Q |
413 |
cgatcaaaatggaagtggaattgaaactatgaaatggagaagaaatggatctggtttctgtgatttacttcaagcttgcaagcatcgtgatagtggaggg |
512 |
Q |
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| T |
46400298 |
cgatcaaaatggaactggaattgaaactatgaaatggagaagaaatggatctggtttctgtgatttacttcaagcttgcaagcatcgtgatagtggaggg |
46400199 |
T |
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| Q |
513 |
aaagtttgaatgcagagataaatttagagagaga |
546 |
Q |
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| T |
46400198 |
aaagtttgaatgcagagataaatttagagagaga |
46400165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 168; Significance: 9e-90; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 168; E-Value: 9e-90
Query Start/End: Original strand, 222 - 537
Target Start/End: Complemental strand, 18554527 - 18554221
Alignment:
| Q |
222 |
aaatgaaatgcagagatcgnnnnnnngaaagttgatctagaaaaacgaaaaacagagtttcgagaaattacgcttgtcgatagcttcgaagaggtcttct |
321 |
Q |
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| T |
18554527 |
aaatgaaatgcagagatcggttttttgaacgttgatctagaaaaacgaaaaacagagtttcaagaaattacgcttgtcgatagcttc------------- |
18554441 |
T |
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| Q |
322 |
tcatcttccatgtcttcgcgttcaaccagctgcatctggccgcttgattcttcggatctgaaaacgaaaacggaaaagataaattatgaaccgatcaaaa |
421 |
Q |
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| T |
18554440 |
--atcttccatgtcttcacgttcgaccagctgcatctggccgcttgattcttcggatctgaaaacaaaaacggaatagataaattattaaccgattaaaa |
18554343 |
T |
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| Q |
422 |
tggaagtggaattgaaactatgaaatggagaagaaatggatctggtttctgtgatttactt------caagcttgcaagcatcgtgatagtggagggaaa |
515 |
Q |
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| T |
18554342 |
tggaagtggaattgaaactataaaatggagaagaaatggttatggtttatgtgatttacttcaagttcaagcttgcaagcatcgtgatggtggagggaaa |
18554243 |
T |
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| Q |
516 |
gtttgaatgcagagataaattt |
537 |
Q |
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| T |
18554242 |
gtttgaatgcagaaatacattt |
18554221 |
T |
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