View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10862_low_24 (Length: 295)
Name: NF10862_low_24
Description: NF10862
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10862_low_24 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 274; Significance: 1e-153; HSPs: 10)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 282
Target Start/End: Complemental strand, 3751642 - 3751361
Alignment:
| Q |
1 |
tatgaactttgctttcattgaaggaaagtataatggtagtacaattactatcttggggaggaattctggtattaataaggctagagagatgcctattatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3751642 |
tatgaactttgctttcattgaaggaaagtataatggtagtacaattactatcttggggaggaattctggtattaataaggctagagagatgcctattatt |
3751543 |
T |
|
| Q |
101 |
ggtggtagtggacttttcagatttgctagaggatatgctaaagctactactcattggtttgatctcaaaactggagatgctattgttgagtacaatgttt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3751542 |
ggtggtagtggacttttcagatttgctagaggatatgctaaagctactactcattggtttgatctcaaaactggagatgctattgttgagtacaatgttt |
3751443 |
T |
|
| Q |
201 |
atgtttttcactattgatttttagttgttgttgttcattttatgagtcatattagggtcatgtgttagcttatactatgtct |
282 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| |
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|
| T |
3751442 |
atgtttttcactattgatttttagttgttgttgttcattttattagtcatattagggtcatgtgttagcttttactatgtct |
3751361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 3 - 235
Target Start/End: Complemental strand, 3762619 - 3762387
Alignment:
| Q |
3 |
tgaactttgctttcattgaaggaaagtataatggtagtacaattactatcttggggaggaattctggtattaataaggctagagagatgcctattattgg |
102 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | | | ||||||||| ||| ||||||||| || |||| |
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|
| T |
3762619 |
tgaattttgctttcattgaaggaaagtataatggtagtactattactatcttggggaggaatccagctcttaataaggttagggagatgcctgttgttgg |
3762520 |
T |
|
| Q |
103 |
tggtagtggacttttcagatttgctagaggatatgctaaagctactactcattggtttgatctcaaaactggagatgctattgttgagtacaatgtttat |
202 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||| ||||| | ||||||||||| || || |
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|
| T |
3762519 |
tggcagtggacttttcagatttgctagaggatatgctcaagctactactcattgggttgatctcaaatctggggatgcatgtattgagtacaatcttcat |
3762420 |
T |
|
| Q |
203 |
gtttttcactattgatttttagttgttgttgtt |
235 |
Q |
| |
|
|||||||| |||||||| ||| || |||||||| |
|
|
| T |
3762419 |
gtttttcattattgattgttaatttttgttgtt |
3762387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 3755509 - 3755275
Alignment:
| Q |
1 |
tatgaactttgctttcattgaaggaaagtataatggtagtacaattactatcttggggaggaattctggtattaataaggctagagagatgcctattatt |
100 |
Q |
| |
|
|||||| |||||||| | |||||||||||||||||| |||||| ||||||| ||||| |||||| ||| | || |||| | ||||||||||||| | ||| |
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|
| T |
3755509 |
tatgaattttgcttttactgaaggaaagtataatggaagtacacttactatattgggaaggaatgctgtttttcataaagttagagagatgcctgtgatt |
3755410 |
T |
|
| Q |
101 |
ggtggtagtggacttttcagatttgctagaggatatgctaaagctactactcattggtttgatctcaaaactggagatgctattgttgagtacaatgttt |
200 |
Q |
| |
|
|||||||||||| ||||||||||||||||||| |||||| |||||| |||||||||||||||| ||||| |||| ||||||||||||||||| ||||||| |
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|
| T |
3755409 |
ggtggtagtggatttttcagatttgctagaggttatgctgaagctaatactcattggtttgatatcaaatctggggatgctattgttgagtataatgttt |
3755310 |
T |
|
| Q |
201 |
atgtttttcactattgatttttagttgttgttgtt |
235 |
Q |
| |
|
||||||||||||||||||| ||| || |||||||| |
|
|
| T |
3755309 |
atgtttttcactattgattgttaattattgttgtt |
3755275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 2 - 235
Target Start/End: Complemental strand, 3776701 - 3776468
Alignment:
| Q |
2 |
atgaactttgctttcattgaaggaaagtataatggtagtacaattactatcttggggaggaattctggtattaataaggctagagagatgcctattattg |
101 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| || | |||||||| ||| || |||||| || ||| |
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|
| T |
3776701 |
atgaattttgctttcattgaaggaaagtataatggtagtaccattactatcttggggaggaatcatgctcgtaataaggttagggaaatgcctgttgttg |
3776602 |
T |
|
| Q |
102 |
gtggtagtggacttttcagatttgctagaggatatgctaaagctactactcattggtttgatctcaaaactggagatgctattgttgagtacaatgttta |
201 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| ||||| |||| |||| |||||| |||||||||||||||| | |
|
|
| T |
3776601 |
gtggtagtggacttttcagatttgctagaggttatgctgaagctactactcattggattgatgccaaagctggggatgcttgtgttgagtacaatgttca |
3776502 |
T |
|
| Q |
202 |
tgtttttcactattgatttttagttgttgttgtt |
235 |
Q |
| |
|
||||||||||||||||| ||| || |||||||| |
|
|
| T |
3776501 |
cgtttttcactattgattgttaattattgttgtt |
3776468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 2 - 219
Target Start/End: Complemental strand, 3781014 - 3780797
Alignment:
| Q |
2 |
atgaactttgctttcattgaaggaaagtataatggtagtacaattactatcttggggaggaattctggtattaataaggctagagagatgcctattattg |
101 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||| |||||||| | ||||||||| ||| |||||| || ||| ||||||||| || ||| |
|
|
| T |
3781014 |
atgaattttgctttcattgaaggaaagtataatggtagtactcttactatcgtagggaggaatcctgccattaatttggttagggagatgcctgttgttg |
3780915 |
T |
|
| Q |
102 |
gtggtagtggacttttcagatttgctagaggatatgctaaagctactactcattggtttgatctcaaaactggagatgctattgttgagtacaatgttta |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||| |||||||||| ||||| |||||||||| |||||| |||||||||||||||| | |
|
|
| T |
3780914 |
gtggtagtggacttttcagatttgctagaggatatgctcaagctaatactcattggattgatttcaaaactggggatgcttgtgttgagtacaatgttca |
3780815 |
T |
|
| Q |
202 |
tgtttttcactattgatt |
219 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
3780814 |
tgtttttcactattgatt |
3780797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 3767037 - 3766823
Alignment:
| Q |
1 |
tatgaactttgctttcattgaaggaaagtataatggtagtacaattactatcttggggaggaattctggtattaataaggctagagagatgcctattatt |
100 |
Q |
| |
|
|||||| |||||||| | |||||||||||||||||| |||||| ||||||| ||||| |||||| ||| | || |||| | ||||||||||||| | ||| |
|
|
| T |
3767037 |
tatgaattttgcttttactgaaggaaagtataatggaagtacacttactatattgggaaggaatgctgtttttcataaagttagagagatgcctgtgatt |
3766938 |
T |
|
| Q |
101 |
ggtggtagtggacttttcagatttgctagaggatatgctaaagctactactcattggtttgatctcaaaactggagatgctattgttgagtacaatgttt |
200 |
Q |
| |
|
|||||||||||| ||||||||||||||||||| |||||| |||||| |||||||| | ||||| ||||| ||| |||||| |||||||||||||||| |
|
|
| T |
3766937 |
ggtggtagtggagttttcagatttgctagaggttatgctgaagctaatactcattcgattgatttcaaatctgaggatgcttgtgttgagtacaatgttc |
3766838 |
T |
|
| Q |
201 |
atgtttttcactatt |
215 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
3766837 |
atgtttttcactatt |
3766823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 8 - 235
Target Start/End: Complemental strand, 3745818 - 3745597
Alignment:
| Q |
8 |
tttgctttcattgaaggaaagtataatggtagtacaattactatcttggggaggaattctggtattaataaggctagagagatgcctattattggtggta |
107 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||| | ||||||||| ||| || ||||||||| ||||||||| |
|
|
| T |
3745818 |
tttgctttcattgaaggaaagtataatgggagtactattactatcttggggagaaattctgctcttaataaggttagggaaatgcctattgttggtggta |
3745719 |
T |
|
| Q |
108 |
gtggacttttcagatttgctagaggatatgctaaagctactactcattggtttga-tctcaaaactggagatgctattgttgagtacaatgtttatgttt |
206 |
Q |
| |
|
|||| ||| |||||||| ||||| |||||| || ||| ||| || | ||| ||||| |||| ||| ||||||||||||||||||||||| |
|
|
| T |
3745718 |
ccggacgttttagatttgcaagaggctatgctcaaactaaaacttatcaatatgattctca-------agatactactgttgagtacaatgtttatgttt |
3745626 |
T |
|
| Q |
207 |
ttcactattgatttttagttgttgttgtt |
235 |
Q |
| |
|
|| |||||||||| ||| || |||||||| |
|
|
| T |
3745625 |
tttactattgattgttaattattgttgtt |
3745597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 3770800 - 3770596
Alignment:
| Q |
1 |
tatgaactttgctttcattgaaggaaagtataatggtagtacaattactatcttggggaggaattctggtattaataaggctagagagatgcctattatt |
100 |
Q |
| |
|
|||||| |||| ||| | |||||||||||||||||| |||| | ||||||| ||||| |||||| || | || |||| | | ||||||||||||| ||| |
|
|
| T |
3770800 |
tatgaattttgtttttactgaaggaaagtataatggaagtaaacttactattttgggaaggaatgttgtttttcataaagtttgagagatgcctatgatt |
3770701 |
T |
|
| Q |
101 |
ggtggtagtggacttttcagatttgctagaggatatgctaaagctactactcattggtttgatctcaaaactggagatgctattgttgagtacaatgttt |
200 |
Q |
| |
|
||||||| ||||||||||||||| |||| |||||| |||||||||||||||| ||||| |||| |||||| |||| ||||| ||||||| |
|
|
| T |
3770700 |
ggtggtattggacttttcagatt------------tgctgaagctaatactcattggtttgatatcaaatctggggatgctgttgtcgagtataatgttt |
3770613 |
T |
|
| Q |
201 |
atgtttttcactattga |
217 |
Q |
| |
|
||||||| || |||||| |
|
|
| T |
3770612 |
atgttttccattattga |
3770596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 3789163 - 3788959
Alignment:
| Q |
1 |
tatgaactttgctttcattgaaggaaagtataatggtagtacaattactatcttggggaggaattctggtattaataaggctagagagatgcctattatt |
100 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||| || || |||||||| || ||| |||| || || ||||||| |||||| |||||| | ||| |
|
|
| T |
3789163 |
tatgaactttgctttgtttgaaggaaagtataatggaagcaccattactat-ttcaggaagaatgttgctaacaataaggttagagaaatgcctgtgatt |
3789065 |
T |
|
| Q |
101 |
ggtggtagtggacttttcagatttgctagaggatatgctaaagctactactcattggtttgatctcaaaactggagatgctattgttgagtacaatgttt |
200 |
Q |
| |
|
||||| |||||| |||| || ||||||| ||||||||| |||||| |||| | | | ||||| ||| || |||||||||| ||||||||||||||| |
|
|
| T |
3789064 |
ggtggaagtggagtttttaggtttgctaagggatatgctgaagctagtacttactcttctgatcccaacacaggagatgctacaattgagtacaatgttt |
3788965 |
T |
|
| Q |
201 |
atgttt |
206 |
Q |
| |
|
|||||| |
|
|
| T |
3788964 |
atgttt |
3788959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 146
Target Start/End: Complemental strand, 3851558 - 3851416
Alignment:
| Q |
4 |
gaactttgctttcattgaaggaaagtataatggtagtacaattactatcttggggaggaattctggtattaataaggctagagagatgcctattattggt |
103 |
Q |
| |
|
||||||||| || ||||||||||||||||||| ||||| |||||||||| || ||||| | | |||||| ||||||| ||||| | || ||| |
|
|
| T |
3851558 |
gaactttgccttgtttgaaggaaagtataatgggagtaccattactatctctggaaggaacgtcgcgaacgataaggttagagagttgcctgtgatcggt |
3851459 |
T |
|
| Q |
104 |
ggtagtggacttttcagatttgctagaggatatgctaaagcta |
146 |
Q |
| |
|
||||| ||| ||||| ||||||||| ||||||||| |||||| |
|
|
| T |
3851458 |
ggtagcggagttttccgatttgctaagggatatgctgaagcta |
3851416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 160
Target Start/End: Original strand, 25985498 - 25985657
Alignment:
| Q |
1 |
tatgaactttgctttcattgaaggaaagtataatggtagtacaattactatcttggggaggaattctggtattaataaggctagagagatgcctattatt |
100 |
Q |
| |
|
|||||| |||||| | |||||||| ||||| |||||||| || || ||||| |||||||||||| ||| | | |||||| ||| || |||||||| ||| |
|
|
| T |
25985498 |
tatgaattttgctataattgaagggaagtacaatggtagcaccatcactattttggggaggaatcctgtttctgataaggttagggaaatgcctataatt |
25985597 |
T |
|
| Q |
101 |
ggtggtagtggacttttcagatttgctagaggatatgctaaagctactactcattggttt |
160 |
Q |
| |
|
||||||||||| |||||| |||||||||||||||||||| || || |||||||||||| |
|
|
| T |
25985598 |
ggtggtagtggtcttttccgatttgctagaggatatgctcaacttagaactcattggttt |
25985657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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