View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10862_low_3 (Length: 465)
Name: NF10862_low_3
Description: NF10862
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10862_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 1 - 446
Target Start/End: Complemental strand, 41993261 - 41992826
Alignment:
| Q |
1 |
gagcaaaatagactttgagacaaaattgatatcgtt----aatcattgattgatataattcattgatattcggatgtacataaaggctagctacccgtgn |
96 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41993261 |
gagcaaaatggactttgagacaaaattgatatcgttcgttaatcattgattgatataattcattgatattcggatgtacataaaggctagctacccgtga |
41993162 |
T |
|
| Q |
97 |
nnnnnnnnntgttacactctcccataatatccaagtcgtcagctatttacaccccaccatgaatcaaaggaagaagctaaagaagnnnnnnnnnnnnnnn |
196 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41993161 |
aaaaaaaaatgttacactctcccataatatccaagccgtcagctatttacaccccaccatgaatcaaaggaagaagctaaagaa---------------a |
41993077 |
T |
|
| Q |
197 |
nnnnntagaaagaaccaatcttgttctattttcatggaaccaagcttggaacttctaagtcttaaaaagatctcaacttaactaactacttagcatgtgt |
296 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41993076 |
aaaaatagaaagaaccaatcttgttctattttcatggaaccaagcttggaacttctaagtcttaaaaagatctcaacttaactaactacttagcatgtgt |
41992977 |
T |
|
| Q |
297 |
ttggttgaacggtggacactgctaccacgagttcaaagctctctcaatgcgaattttagaagttccaatgtgtagcttctgatccactgtgatttttcgc |
396 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41992976 |
ttggttgaacggtggacactgctaccacgagttcaaagcactctcaatgcgaattttagaagttccaatgtgtagcttctgatccactgtgatttttcgc |
41992877 |
T |
|
| Q |
397 |
cgcga-ttttagtgtttaccaaacacatgtgtactttcaattactcatgcc |
446 |
Q |
| |
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||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
41992876 |
cgcgatttttagtgtttaccaaacacatgtgtactttcaattactcatgcc |
41992826 |
T |
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