View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10862_low_31 (Length: 242)
Name: NF10862_low_31
Description: NF10862
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10862_low_31 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 188; Significance: 1e-102; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 18 - 230
Target Start/End: Complemental strand, 6363462 - 6363250
Alignment:
| Q |
18 |
atttgcagccaaacatggttggggtcacggtagaacaggtaaatctttacccaattcaacaactttactctnnnnnnntaattcaacagtgctaaatttt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
6363462 |
atttgcagccaaacatggttggggtcacggtagaacaggtaaatctctacccaattcaacaactttactctaaaaaaataattcaacagtgctaaatttt |
6363363 |
T |
|
| Q |
118 |
attttgtggaacaggctatccagaataataaattgttcatactggatcaccacgacccactctttccatatttgaggaaaataaatgcaaccgagactaa |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6363362 |
attttgtggaacaggctatccagaataataaattgttcatactggatcaccacgacccactctttccatatttgaggaaaataaatgcaaccgagactaa |
6363263 |
T |
|
| Q |
218 |
ggcctatgctact |
230 |
Q |
| |
|
||||||||||||| |
|
|
| T |
6363262 |
ggcctatgctact |
6363250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 108 - 229
Target Start/End: Complemental strand, 6352433 - 6352312
Alignment:
| Q |
108 |
gctaaattttattttgtggaacaggctatccagaataataaattgttcatactggatcaccacgacccactctttccatatttgaggaaaataaatgcaa |
207 |
Q |
| |
|
||||||||||||||||| |||||||||||| | |||| ||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6352433 |
gctaaattttattttgtcatacaggctatccaagacaatagattgtacatacttgatcaccacgacccactctttccatatttgaggaaaataaatgcaa |
6352334 |
T |
|
| Q |
208 |
ccgagactaaggcctatgctac |
229 |
Q |
| |
|
||||||| |||||||||||||| |
|
|
| T |
6352333 |
ccgagacaaaggcctatgctac |
6352312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 108 - 226
Target Start/End: Complemental strand, 7459268 - 7459150
Alignment:
| Q |
108 |
gctaaattttattttgtggaacaggctatccagaataataaattgttcatactggatcaccacgacccactctttccatatttgaggaaaataaatgcaa |
207 |
Q |
| |
|
||||||||||||||||| |||||||||||| || |||||||||| |||||| ||||||||||| | ||| ||||||||||||||| ||||||||||| |
|
|
| T |
7459268 |
gctaaattttattttgtcatacaggctatccaaaacaataaattgtacatacttgatcaccacgatctactaattccatatttgaggagaataaatgcaa |
7459169 |
T |
|
| Q |
208 |
ccgagactaaggcctatgc |
226 |
Q |
| |
|
| ||||| ||| ||||||| |
|
|
| T |
7459168 |
ctgagacaaagtcctatgc |
7459150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 109 - 227
Target Start/End: Complemental strand, 6424276 - 6424158
Alignment:
| Q |
109 |
ctaaattttattttgtggaacaggctatccagaataataaattgttcatactggatcaccacgacccactctttccatatttgaggaaaataaatgcaac |
208 |
Q |
| |
|
||||||| |||||||| || |||||||||| || || ||||||| ||| || |||||| | ||| | | | ||||||||||||||||||||||||||| |
|
|
| T |
6424276 |
ctaaattatattttgttgattaggctatccaaaacaacaaattgtacatccttgatcactatgacatagtatatccatatttgaggaaaataaatgcaac |
6424177 |
T |
|
| Q |
209 |
cgagactaaggcctatgct |
227 |
Q |
| |
|
||||| |||||||||||| |
|
|
| T |
6424176 |
tgagacaaaggcctatgct |
6424158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 155 - 229
Target Start/End: Complemental strand, 6332033 - 6331959
Alignment:
| Q |
155 |
catactggatcaccacgacccactctttccatatttgaggaaaataaatgcaaccgagactaaggcctatgctac |
229 |
Q |
| |
|
|||||| |||||||| |||||| | ||||||||||||||||||||||| |||| || || ||||| |||||||| |
|
|
| T |
6332033 |
catacttgatcaccatgacccaatatttccatatttgaggaaaataaactcaactgatacaaaggcatatgctac |
6331959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 204
Target Start/End: Complemental strand, 6370228 - 6370138
Alignment:
| Q |
114 |
ttttattttgtggaacaggctatccagaataataaattgttcatactggatcaccacgacccactctttccatatttgaggaaaataaatg |
204 |
Q |
| |
|
|||| |||||| ||||||||||| | | |||| ||||| |||||| ||||||||||| || ||| |||||||||||||||| |||||| |
|
|
| T |
6370228 |
tttttttttgtctaacaggctatcgaagacaatagattgtacatacttgatcaccacgatgcaatctatccatatttgaggaaagtaaatg |
6370138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University