View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10862_low_34 (Length: 240)

Name: NF10862_low_34
Description: NF10862
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10862_low_34
NF10862_low_34
[»] chr3 (1 HSPs)
chr3 (17-240)||(4818741-4818964)
[»] chr8 (5 HSPs)
chr8 (66-240)||(30647853-30648027)
chr8 (80-240)||(26088160-26088320)
chr8 (128-240)||(14726344-14726456)
chr8 (130-240)||(28865069-28865179)
chr8 (130-225)||(28859864-28859959)
[»] chr1 (1 HSPs)
chr1 (130-240)||(26087635-26087745)
[»] chr7 (2 HSPs)
chr7 (143-240)||(6612418-6612515)
chr7 (143-219)||(17294268-17294344)


Alignment Details
Target: chr3 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 17 - 240
Target Start/End: Original strand, 4818741 - 4818964
Alignment:
Q  17 agcagggagtaaggaaaacttaaacaacctacctaacactagggaagttgttttatcttgcagacattactgaaaaattagagtttcaaacatgaatacc 116  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4818741 agcagggagtaaggaaaacttaaacaacctaccaaacactagggaagttgttttatcttgcagacattactgaaaaattagagtttcaaacatgaatacc 4818840  T
Q  117 acaaataatggtgaccgattgaatggtgcagctgaagcaggtgatatagatctcctttatacagtaattcaagatgatccattcattttggagatgatag 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4818841 acaaataatggtgaccgattgaatggtgcagctgaagcaggtgatatagatctcctttatacagtaattcaagatgatccattcattttggagatgatag 4818940  T
Q  217 atttaataccatttgttgaaactc 240  Q
    ||||||||||||||||||||||||    
T  4818941 atttaataccatttgttgaaactc 4818964  T

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Target: chr8 (Bit Score: 115; Significance: 2e-58; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 66 - 240
Target Start/End: Original strand, 30647853 - 30648027
Alignment:
Q  66 gttttatcttgcagacattactgaaaaattagagtttcaaacatgaataccacaaataatggtgaccgattgaatggtgcagctgaagcaggtgatatag 165  Q
    ||||||||||||| ||||||||||||||||| || |||||||||||| || ||||||||||| || |||||||||| |||||||||||||||||||||||    
T  30647853 gttttatcttgcacacattactgaaaaattaaagcttcaaacatgaacactacaaataatggagagcgattgaatgctgcagctgaagcaggtgatatag 30647952  T
Q  166 atctcctttatacagtaattcaagatgatccattcattttggagatgatagatttaataccatttgttgaaactc 240  Q
    ||||||| || |||||||||||||||||||||| ||||||||||   ||||||| ||||||||||||||||||||    
T  30647953 atctcctctacacagtaattcaagatgatccatacattttggagcatatagattcaataccatttgttgaaactc 30648027  T

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Target: chr8; HSP #2
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 80 - 240
Target Start/End: Original strand, 26088160 - 26088320
Alignment:
Q  80 acattactgaaaaattagagtttcaaacatgaataccacaaataatggtgaccgattgaatggtgcagctgaagcaggtgatatagatctcctttataca 179  Q
    ||||||||| || ||||||| |||||||||||| |||||||||||||||||||||||||| | ||||||| || ||||||||||||||||||| ||  ||    
T  26088160 acattactgtaatattagagcttcaaacatgaacaccacaaataatggtgaccgattgaaagctgcagctcaaacaggtgatatagatctcctctactca 26088259  T
Q  180 gtaattcaagatgatccattcattttggagatgatagatttaataccatttgttgaaactc 240  Q
    ||||||||||||||||||| |||||||||||  |||||| ||||| |||||||||||||||    
T  26088260 gtaattcaagatgatccatccattttggagaatatagatgtaatatcatttgttgaaactc 26088320  T

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Target: chr8; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 128 - 240
Target Start/End: Original strand, 14726344 - 14726456
Alignment:
Q  128 tgaccgattgaatggtgcagctgaagcaggtgatatagatctcctttatacagtaattcaagatgatccattcattttggagatgatagatttaatacca 227  Q
    |||||||||||| | |||||||  | ||||||||||||||||||| || |||||||||||||||||||||| ||||||||||   |||||||||||| |     
T  14726344 tgaccgattgaaagctgcagctctaacaggtgatatagatctcctctacacagtaattcaagatgatccatccattttggagcatatagatttaataact 14726443  T
Q  228 tttgttgaaactc 240  Q
    |||||||||||||    
T  14726444 tttgttgaaactc 14726456  T

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Target: chr8; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 130 - 240
Target Start/End: Original strand, 28865069 - 28865179
Alignment:
Q  130 accgattgaatggtgcagctgaagcaggtgatatagatctcctttatacagtaattcaagatgatccattcattttggagatgatagatttaataccatt 229  Q
    ||||| |||||| ||||||| | ||||||||| || ||||||| || |||||||||||||||||||||| | ||||||||   |||||||||||||||||    
T  28865069 accgaatgaatgctgcagctcatgcaggtgatgtaaatctcctctacacagtaattcaagatgatccatacgttttggagcgtatagatttaataccatt 28865168  T
Q  230 tgttgaaactc 240  Q
    |||||||||||    
T  28865169 tgttgaaactc 28865179  T

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Target: chr8; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 130 - 225
Target Start/End: Original strand, 28859864 - 28859959
Alignment:
Q  130 accgattgaatggtgcagctgaagcaggtgatatagatctcctttatacagtaattcaagatgatccattcattttggagatgatagatttaatac 225  Q
    |||||||||||| ||||||| | ||||||||| |||||||||| || ||||||||| |||||||||||| | || |||||   |||||||||||||    
T  28859864 accgattgaatgatgcagctcatgcaggtgatgtagatctcctatacacagtaatttaagatgatccatacgttatggagcgtatagatttaatac 28859959  T

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Target: chr1 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 130 - 240
Target Start/End: Complemental strand, 26087745 - 26087635
Alignment:
Q  130 accgattgaatggtgcagctgaagcaggtgatatagatctcctttatacagtaattcaagatgatccattcattttggagatgatagatttaataccatt 229  Q
    |||||||||| |||||||||||||||||||||||||||||||| || |||||||||||||||||||||| ||||||||||   |||||||||||||||||    
T  26087745 accgattgaaaggtgcagctgaagcaggtgatatagatctcctctacacagtaattcaagatgatccatacattttggagcgtatagatttaataccatt 26087646  T
Q  230 tgttgaaactc 240  Q
    |||||||||||    
T  26087645 tgttgaaactc 26087635  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 143 - 240
Target Start/End: Complemental strand, 6612515 - 6612418
Alignment:
Q  143 tgcagctgaagcaggtgatatagatctcctttatacagtaattcaagatgatccattcattttggagatgatagatttaataccatttgttgaaactc 240  Q
    ||||||| |||||||  | ||||||||||| ||  |||||||| | ||||||||||||||  |||||   |||||||  |||||||||||||||||||    
T  6612515 tgcagctcaagcaggcaacatagatctcctctacgcagtaattgatgatgatccattcatcctggagcatatagattcgataccatttgttgaaactc 6612418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 219
Target Start/End: Complemental strand, 17294344 - 17294268
Alignment:
Q  143 tgcagctgaagcaggtgatatagatctcctttatacagtaattcaagatgatccattcattttggagatgatagatt 219  Q
    |||||||||||| ||| |||||||  |||||||| |||||||||||  |||| ||| |||| | ||||| |||||||    
T  17294344 tgcagctgaagcgggtaatatagacatcctttatgcagtaattcaaattgattcatccattctagagattatagatt 17294268  T

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