View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10862_low_36 (Length: 239)
Name: NF10862_low_36
Description: NF10862
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10862_low_36 |
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Alignment Details
Target: chr1 (Bit Score: 157; Significance: 1e-83; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 69 - 225
Target Start/End: Original strand, 43988823 - 43988979
Alignment:
| Q |
69 |
taaacataatcaatccacttagaatataaaacaattccttttttgagagaggacttggcaataaacttagcaaggcaaagagtggtagctatggactata |
168 |
Q |
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| T |
43988823 |
taaacataatcaatccacttagaatataaaacaattccttttttgagagaggacttggcaataaacttagcaaggcaaagagtggtagctatggactata |
43988922 |
T |
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| Q |
169 |
tcatgtagcttgcctttaaatcttttaggaatactgttgtagcttgatatccttctg |
225 |
Q |
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| T |
43988923 |
tcatgtagcttgcctttaaatcttttaggaatactgttgtagcttgatatccttctg |
43988979 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 130 - 213
Target Start/End: Original strand, 43984624 - 43984708
Alignment:
| Q |
130 |
taaacttagcaaggcaaagagtggtagctatggactat-atcatgtagcttgcctttaaatcttttaggaatactgttgtagctt |
213 |
Q |
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| T |
43984624 |
taaacttagcaaggtacatagtggtggttatggactatcatcatgtagcttgcttttaaatccttcaggaatggtgttgcagctt |
43984708 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 130 - 213
Target Start/End: Original strand, 44002632 - 44002716
Alignment:
| Q |
130 |
taaacttagcaaggcaaagagtggtagctatggactat-atcatgtagcttgcctttaaatcttttaggaatactgttgtagctt |
213 |
Q |
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| T |
44002632 |
taaacttagcaaggtacatagtggtggttatggactatcatcatgtagcttgcttttaaatccttcaggaatggtgttgcagctt |
44002716 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 224
Target Start/End: Complemental strand, 43919109 - 43919006
Alignment:
| Q |
121 |
acttggcaataaacttagcaaggcaaagagtggtagctatggactat-atcatgtagcttgcctttaaatcttttaggaatactgttgtagcttgatatc |
219 |
Q |
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| T |
43919109 |
acttagcaataaacttagcaaggcacatagtggtggc-atgaactatcatcctgtagcttgcttttgaatccttcaggagtggtgttgtagtttgatgtc |
43919011 |
T |
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| Q |
220 |
cttct |
224 |
Q |
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||||| |
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| T |
43919010 |
cttct |
43919006 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 128 - 224
Target Start/End: Original strand, 8830435 - 8830532
Alignment:
| Q |
128 |
aataaacttagcaaggcaaagagtggtagctatggactat-atcatgtagcttgcctttaaatcttttaggaatactgttgtagcttgatatccttct |
224 |
Q |
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| T |
8830435 |
aataaacttagcaaggcacatagtggtgactatggactatcatcatgtagcttgcttttaaatctttctggaatggtgttgtagcttgatgtccttct |
8830532 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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