View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10862_low_38 (Length: 238)
Name: NF10862_low_38
Description: NF10862
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10862_low_38 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 3751688 - 3751910
Alignment:
| Q |
1 |
ccttgagcttttccaacaagcttggaactcaattgtggtcctatagtcaaagggtcatcaaacatgttgactgaaccaaaataagtggttgtgtttagct |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3751688 |
ccttgagcttttccaacaagcttagaactcaattgtggtcctatagtcaaagggtcatcaaacatgttgactgaaccaaaataagtggttgtgtttagct |
3751787 |
T |
|
| Q |
101 |
tcaatgttggtggaacaattgtaattgcagtgggatttttcccactcaagatatcatgccaatagaatctgaaatgacttagtttttctttcttgtttag |
200 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3751788 |
tcaatggtggtggaacaattgtaattgcagtgggatttttcccactcaagatatcatgccaatagaatctgaaatgacttagtttttctttcttgtttag |
3751887 |
T |
|
| Q |
201 |
gcttaacaatttgcggtctattg |
223 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
3751888 |
gcttaacaatttgcggtctattg |
3751910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 3745871 - 3746093
Alignment:
| Q |
1 |
ccttgagcttttccaacaagcttggaactcaattgtggtcctatagtcaaagggtcatcaaacatgttgactgaaccaaaataagtggttgtgtttagct |
100 |
Q |
| |
|
||||||||||||||||||||||| ||||||| || |||||||| ||| ||||||| |||| ||||||||| |||||||| |||| ||||||||||||| |
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|
| T |
3745871 |
ccttgagcttttccaacaagcttagaactcatttttggtcctaaagttaaagggttgtcaataatgttgactaaaccaaaagaagtagttgtgtttagct |
3745970 |
T |
|
| Q |
101 |
tcaatgttggtggaacaattgtaattgcagtgggatttttcccactcaagatatcatgccaatagaatctgaaatgacttagtttttctttcttgtttag |
200 |
Q |
| |
|
|||||| | |||| |||| |||||||| ||| || ||||| ||||||| ||| ||||||||| ||||||||||||||||||| ||||||| |||||||| |
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|
| T |
3745971 |
tcaatggtagtggtacaactgtaattgaagtagggttttttccactcatgatgtcatgccaaaagaatctgaaatgacttagcttttcttggttgtttag |
3746070 |
T |
|
| Q |
201 |
gcttaacaatttgcggtctattg |
223 |
Q |
| |
|
| |||||||||| ||||||||| |
|
|
| T |
3746071 |
gtgtaacaatttggggtctattg |
3746093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 3781061 - 3781281
Alignment:
| Q |
1 |
ccttgagcttttccaacaagcttggaactcaattgtggtcctatagtcaaagggtcatcaaacatgttgactgaaccaaaataagtggttgtgtttagct |
100 |
Q |
| |
|
||||||||| ||||||||||||| ||||||| || |||||||| ||| ||||||| |||| |||||| || |||||||| ||||||| ||||| | |
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|
| T |
3781061 |
ccttgagctcttccaacaagcttagaactcagttctggtcctaaagttaaagggttgtcaatcatgttaaccaaaccaaaagcggtggttgagtttactt |
3781160 |
T |
|
| Q |
101 |
tcaatgttggtggaacaattgtaattgcagtgggatttttcccactcaagatatcatgccaatagaatctgaaatgacttagtttttctttcttgtttag |
200 |
Q |
| |
|
| ||| |||||||| ||||| || | ||| |||||||| |||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
3781161 |
ttgatgatggtggaataattgcaaccgaagttggattttttccactcaagacgtcatgccaatagaatctgaaatgacttagcttttctttcttgtttag |
3781260 |
T |
|
| Q |
201 |
gcttaacaatttgcggtctat |
221 |
Q |
| |
|
|| |||||||||||| ||||| |
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|
| T |
3781261 |
gcctaacaatttgcgatctat |
3781281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 3755555 - 3755772
Alignment:
| Q |
1 |
ccttgagcttttccaacaagcttggaactcaattgtggtcctatagtcaaagggtcatcaaacatgttgactgaaccaaaataagtggttgtgtttagct |
100 |
Q |
| |
|
||||||||||||||||||| ||| ||| |||| |||||||||| ||| ||||||| || | |||| |||||||||||| |||||||| |||||| | |
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|
| T |
3755555 |
ccttgagcttttccaacaatcttagaattcaactgtggtcctaaagttaaagggttgtcgatcatgcggactgaaccaaaggcagtggttgagtttagtt |
3755654 |
T |
|
| Q |
101 |
tcaatgttggtggaacaattgtaattgcagtgggatttttcccactcaagatatcatgccaatagaatctgaaatgacttagtttttctttcttgtttag |
200 |
Q |
| |
|
||| || |||||| |||| || || || ||| || ||||| ||||||| || || ||||| |||||||||||||||||||||||||| ||| ||||| |
|
|
| T |
3755655 |
tcattggtggtgggacaactgcaactgaagtagggttttttccactcactatgtcgtgccagtagaatctgaaatgacttagtttttc---cttctttag |
3755751 |
T |
|
| Q |
201 |
gcttaacaatttgcggtctat |
221 |
Q |
| |
|
|||||| |||||||||||||| |
|
|
| T |
3755752 |
gcttaataatttgcggtctat |
3755772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 3771313 - 3771530
Alignment:
| Q |
1 |
ccttgagcttttccaacaagcttggaactcaattgtggtcctatagtcaaagggtcatcaaacatgttgactgaaccaaaataagtggttgtgtttagct |
100 |
Q |
| |
|
||||||| ||||||||||||||| ||||||| || |||||||| ||| ||||||| || | |||| ||||||||||||| ||||||||||||||| | |
|
|
| T |
3771313 |
ccttgagattttccaacaagcttagaactcagttctggtcctaaagttaaagggttgtcgatcatgcggactgaaccaaaagcagtggttgtgtttagtt |
3771412 |
T |
|
| Q |
101 |
tcaatgttggtggaacaattgtaattgcagtgggatttttcccactcaagatatcatgccaatagaatctgaaatgacttagtttttctttcttgtttag |
200 |
Q |
| |
|
||| || ||||||||||||| | | | || || ||||| |||||| || || ||||| |||||||||||||||||||||||||| ||| ||||| |
|
|
| T |
3771413 |
tcattggtggtggaacaattattaccgaaggagggttttttccactcgctatctcgtgccagtagaatctgaaatgacttagtttttc---cttctttag |
3771509 |
T |
|
| Q |
201 |
gcttaacaatttgcggtctat |
221 |
Q |
| |
|
|||||| |||||||||||||| |
|
|
| T |
3771510 |
gcttaataatttgcggtctat |
3771530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 3776748 - 3776970
Alignment:
| Q |
1 |
ccttgagcttttccaacaagcttggaactcaattgtggtcctatagtcaaagggtcatcaaacatgttgactgaaccaaaataagtggttgtgtttagct |
100 |
Q |
| |
|
||||||||| | |||||||| || |||||||||| ||||||| ||| ||||||| |||| |||| | ||| |||||||| ||||||||| ||||| | |
|
|
| T |
3776748 |
ccttgagctctaccaacaagtttagaactcaattcgggtcctaaagttaaagggttgtcaatcatgctaactaaaccaaaaaaagtggttgagtttactt |
3776847 |
T |
|
| Q |
101 |
tcaatgttggtggaacaattgtaattgcagtgggatttttcccactcaagatatcatgccaatagaatctgaaatgacttagtttttctttcttgtttag |
200 |
Q |
| |
|
| ||| |||||||||||||| || | ||| |||||||| ||||| | || ||||||||||| ||| ||||||||||||| ||||| ||||||||||| |
|
|
| T |
3776848 |
ttgatgatggtggaacaattgcaaccgaagttggattttttccactaactatgtcatgccaatataatttgaaatgacttagcttttccttcttgtttag |
3776947 |
T |
|
| Q |
201 |
gcttaacaatttgcggtctattg |
223 |
Q |
| |
|
|| |||||| ||||| ||||||| |
|
|
| T |
3776948 |
gcctaacaacttgcgatctattg |
3776970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 3762667 - 3762895
Alignment:
| Q |
1 |
ccttgagcttttccaacaagcttggaactcaattgtggtcctatagtcaaagggtcatcaaacatgttgactgaaccaaaa----taagt--ggttgtgt |
94 |
Q |
| |
|
||||||||| |||||||||| || ||||||| || ||||||| ||||||||||| |||| |||| |||| |||||||| |||| ||||| || |
|
|
| T |
3762667 |
ccttgagctcttccaacaagtttagaactcagttcgggtcctaaagtcaaagggttgtcaatcatgcggactaaaccaaaagcattaaggccggttgagt |
3762766 |
T |
|
| Q |
95 |
ttagcttcaatgttggtggaacaattgtaattgcagtgggatttttcccactcaagatatcatgccaatagaatctgaaatgacttagtttttctttctt |
194 |
Q |
| |
|
||| ||||||| |||| ||||||||||||||| || || || || ||||| | || |||||||| |||||||| ||||| ||||||||||| ||||| |
|
|
| T |
3762767 |
gtagtttcaatggtggttgaacaattgtaattgttgtagggttatttccacttagtatgtcatgccagtagaatctaaaatggcttagtttttccttctt |
3762866 |
T |
|
| Q |
195 |
gtttaggcttaacaatttgcggtctattg |
223 |
Q |
| |
|
|||||||| |||||| ||||||||||||| |
|
|
| T |
3762867 |
gtttaggcctaacaacttgcggtctattg |
3762895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 136 - 223
Target Start/End: Original strand, 3767212 - 3767299
Alignment:
| Q |
136 |
tttttcccactcaagatatcatgccaatagaatctgaaatgacttagtttttctttcttgtttaggcttaacaatttgcggtctattg |
223 |
Q |
| |
|
||||| ||||||| || ||||||||||| ||| ||||||||||||| ||||| ||||||||||||| |||||| ||||| ||||||| |
|
|
| T |
3767212 |
ttttttccactcactatgtcatgccaataaaatttgaaatgacttagcttttccttcttgtttaggcctaacaacttgcgatctattg |
3767299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 3767083 - 3767162
Alignment:
| Q |
1 |
ccttgagcttttccaacaagcttggaactcaattgtggtcctatagtcaaagggtcatcaaacatgttgactgaaccaaa |
80 |
Q |
| |
|
||||||||||||||||||| ||| ||| |||| |||||||||| ||| ||||||| || | |||| |||||||||||| |
|
|
| T |
3767083 |
ccttgagcttttccaacaatcttagaattcaactgtggtcctaaagttaaagggttgtcgatcatgcggactgaaccaaa |
3767162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 182
Target Start/End: Complemental strand, 25985452 - 25985274
Alignment:
| Q |
1 |
ccttgagcttttccaacaagcttggaactcaattgtggtcctatagtcaaagggtcatcaaacatgttgactgaaccaaaataagtggttgtgtttagct |
100 |
Q |
| |
|
||||| ||||||||||| | |||||||||||||| ||||||| || ||||||| |||| |||||| ||| |||||||| |||||||| |||| | |
|
|
| T |
25985452 |
ccttgtgcttttccaaccaatttggaactcaattgaggtcctaaggttaaagggttctcaatcatgttaactaaaccaaaagcagtggttgagttt---t |
25985356 |
T |
|
| Q |
101 |
tcaatgttggtggaacaattgtaattgcagtgggatttttcccactcaagatatcatgccaatagaatctgaaatgacttag |
182 |
Q |
| |
|
|||| | |||||||||||||| |||| || || || || ||||| | || ||||||||||||||| | ||||| ||||| |
|
|
| T |
25985355 |
tcaaaggtggtggaacaattggtattgaagaagggttgtttccactaactatgtcatgccaatagaattttaaatggcttag |
25985274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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