View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10862_low_40 (Length: 235)

Name: NF10862_low_40
Description: NF10862
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10862_low_40
NF10862_low_40
[»] chr3 (11 HSPs)
chr3 (1-82)||(24364643-24364724)
chr3 (148-219)||(24364790-24364861)
chr3 (1-82)||(24369923-24370004)
chr3 (1-82)||(24358567-24358648)
chr3 (150-219)||(24369786-24369855)
chr3 (148-219)||(24344499-24344570)
chr3 (13-82)||(24354905-24354974)
chr3 (148-219)||(24351686-24351757)
chr3 (152-213)||(24354777-24354838)
chr3 (166-219)||(24313936-24313989)
chr3 (166-219)||(24358433-24358486)


Alignment Details
Target: chr3 (Bit Score: 82; Significance: 7e-39; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 24364643 - 24364724
Alignment:
Q  1 aaaccaaaccaaacctcgaactttcttatgtggtcgagtagaaataaaaggtgatctttgtctagccttcttccgattaagc 82  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24364643 aaaccaaaccaaacctcgaactttcttatgtggtcgagtagaaataaaaggtgatctttgtctagccttcttccgattaagc 24364724  T

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Target: chr3; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 148 - 219
Target Start/End: Original strand, 24364790 - 24364861
Alignment:
Q  148 agtgtcacttgaagaatcataatctatttctactgcattctggccaagtattactacatcaaacttggaagt 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24364790 agtgtcacttgaagaatcataatctatttctactgcattctggccaagtattactacatcaaacttggaagt 24364861  T

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Target: chr3; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 24370004 - 24369923
Alignment:
Q  1 aaaccaaaccaaacctcgaactttcttatgtggtcgagtagaaataaaaggtgatctttgtctagccttcttccgattaagc 82  Q
    |||||||||||||||| ||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||    
T  24370004 aaaccaaaccaaaccttgaactttcttatgtggtcgagaagaaacaaaaggtgatctttgtctagccttcttccgattaagc 24369923  T

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Target: chr3; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 24358648 - 24358567
Alignment:
Q  1 aaaccaaaccaaacctcgaactttcttatgtggtcgagtagaaataaaaggtgatctttgtctagccttcttccgattaagc 82  Q
    |||||||||||||||||||||||| ||||||||||||| |||||  ||||||||||||||| |||||||||||| |||||||    
T  24358648 aaaccaaaccaaacctcgaacttttttatgtggtcgaggagaaacgaaaggtgatctttgtttagccttcttccaattaagc 24358567  T

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Target: chr3; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 150 - 219
Target Start/End: Complemental strand, 24369855 - 24369786
Alignment:
Q  150 tgtcacttgaagaatcataatctatttctactgcattctggccaagtattactacatcaaacttggaagt 219  Q
    |||||| ||||| |||||| |||||||||| |||||||| ||||||||||||||||||||||||| ||||    
T  24369855 tgtcacatgaagtatcatagtctatttctaatgcattcttgccaagtattactacatcaaacttgaaagt 24369786  T

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Target: chr3; HSP #6
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 148 - 219
Target Start/End: Complemental strand, 24344570 - 24344499
Alignment:
Q  148 agtgtcacttgaagaatcataatctatttctactgcattctggccaagtattactacatcaaacttggaagt 219  Q
    |||||||| ||||| |||||| |||||||||||||||||| | |||||||||||||||||||| || |||||    
T  24344570 agtgtcacatgaagtatcatagtctatttctactgcattccgaccaagtattactacatcaaatttcgaagt 24344499  T

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Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 13 - 82
Target Start/End: Complemental strand, 24354974 - 24354905
Alignment:
Q  13 acctcgaactttcttatgtggtcgagtagaaataaaaggtgatctttgtctagccttcttccgattaagc 82  Q
    ||||| |||||||||||| ||||||| |||||  |||||||||||||||||||| |||||| ||||||||    
T  24354974 acctctaactttcttatgaggtcgaggagaaacgaaaggtgatctttgtctagcattcttctgattaagc 24354905  T

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Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 148 - 219
Target Start/End: Complemental strand, 24351757 - 24351686
Alignment:
Q  148 agtgtcacttgaagaatcataatctatttctactgcattctggccaagtattactacatcaaacttggaagt 219  Q
    |||||||| |||||||||||| |||||||| || ||||| |  |||||||||| ||||||||||||||||||    
T  24351757 agtgtcacatgaagaatcatagtctatttcaaccgcattattaccaagtattagtacatcaaacttggaagt 24351686  T

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Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 152 - 213
Target Start/End: Complemental strand, 24354838 - 24354777
Alignment:
Q  152 tcacttgaagaatcataatctatttctactgcattctggccaagtattactacatcaaactt 213  Q
    |||| ||||| |||||| |||||||||||||||||||||||||||||   ||||||||||||    
T  24354838 tcacatgaaggatcatagtctatttctactgcattctggccaagtatgtgtacatcaaactt 24354777  T

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Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 166 - 219
Target Start/End: Complemental strand, 24313989 - 24313936
Alignment:
Q  166 ataatctatttctactgcattctggccaagtattactacatcaaacttggaagt 219  Q
    |||||||||||||| |||||||||| ||||||| | |||||||||||| |||||    
T  24313989 ataatctatttctagtgcattctggtcaagtatgagtacatcaaactttgaagt 24313936  T

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Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 219
Target Start/End: Complemental strand, 24358486 - 24358433
Alignment:
Q  166 ataatctatttctactgcattctggccaagtattactacatcaaacttggaagt 219  Q
    |||||||||||||||||||||| ||||||  ||   ||||||||||||||||||    
T  24358486 ataatctatttctactgcattccggccaaaaatgtgtacatcaaacttggaagt 24358433  T

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