View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10862_low_42 (Length: 230)
Name: NF10862_low_42
Description: NF10862
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10862_low_42 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 18 - 215
Target Start/End: Complemental strand, 11532510 - 11532313
Alignment:
| Q |
18 |
acaatgtcatcaatatcttcttcaccttcattcccaccaagacttccgacactaattccatgaccaggaccacaaaaaacatctgaaattcgaacattcc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11532510 |
acaatgtcatcaatatcttcttcaccttcattcccaccaagacttccgacactaattccatgaccaggaccacaaaaaacatctgaaattcgaacattcc |
11532411 |
T |
|
| Q |
118 |
tagtacctgagagcatagcaatgcaatcatcgccggttccaatgttcacacttgaaatatttattctctttgacatccctattttaataccatctgtg |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
11532410 |
tagtacctgagagcatagcaatgcaatcatcgccggttccaatgttcacacttgaaatatttattccctttgacatccctattttaataccatctgtg |
11532313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 65; Significance: 1e-28; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 21 - 141
Target Start/End: Complemental strand, 26883743 - 26883623
Alignment:
| Q |
21 |
atgtcatcaatatcttcttcaccttcattcccaccaagacttccgacactaattccatgaccaggaccacaaaaaacatctgaaattcgaacattcctag |
120 |
Q |
| |
|
|||||||||| ||||| ||||| ||||| | |||||||||||||||||||||| |||||||| ||||||||||| || |||||||||||||||| ||| |
|
|
| T |
26883743 |
atgtcatcaagatcttgttcactttcatacttaccaagacttccgacactaatttcatgaccaaaaccacaaaaaatatttgaaattcgaacattcgtag |
26883644 |
T |
|
| Q |
121 |
tacctgagagcatagcaatgc |
141 |
Q |
| |
|
||| ||||||||||| ||||| |
|
|
| T |
26883643 |
tacttgagagcatagtaatgc |
26883623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 21 - 141
Target Start/End: Complemental strand, 26884443 - 26884323
Alignment:
| Q |
21 |
atgtcatcaatatcttcttcaccttcattcccaccaagacttccgacactaattccatgaccaggaccacaaaaaacatctgaaattcgaacattcctag |
120 |
Q |
| |
|
|||||||||| ||||| ||||| ||||| | |||||||||||||||||||||| |||||| | |||||||||||||| |||||||||||||||| ||| |
|
|
| T |
26884443 |
atgtcatcaagatcttgttcactttcatacttaccaagacttccgacactaatttcatgacaaaaaccacaaaaaacatttgaaattcgaacattcgtag |
26884344 |
T |
|
| Q |
121 |
tacctgagagcatagcaatgc |
141 |
Q |
| |
|
||| ||||||||||| ||||| |
|
|
| T |
26884343 |
tacttgagagcatagtaatgc |
26884323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 21 - 183
Target Start/End: Complemental strand, 26886150 - 26885989
Alignment:
| Q |
21 |
atgtcatcaatatcttcttcaccttcattcccaccaagacttccgacactaattccatgaccaggaccacaaaaaacatctgaaattcgaacattcctag |
120 |
Q |
| |
|
|||||||||| ||||| ||||| ||||| | || |||||||||||| ||||| |||||||| |||||||||| ||| | |||||||||||||||||| |
|
|
| T |
26886150 |
atgtcatcaagatcttattcactttcatacttgcctagacttccgacattaatttcatgaccaaaaccacaaaaa-catttaaaattcgaacattcctag |
26886052 |
T |
|
| Q |
121 |
tacctgagagcatagcaatgcaatcatcgccggttccaatgttcacacttgaaatatttattc |
183 |
Q |
| |
|
||||||||||||||| |||||||| ||| || || ||||||||||| ||| |||||||||| |
|
|
| T |
26886051 |
tacctgagagcatagtaatgcaatgatcaccaatttcaatgttcacatttgttatatttattc |
26885989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 1e-21; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 55 - 171
Target Start/End: Complemental strand, 49616856 - 49616740
Alignment:
| Q |
55 |
caagacttccgacactaattccatgaccaggaccacaaaaaacatctgaaattcgaacattcctagtacctgagagcatagcaatgcaatcatcgccggt |
154 |
Q |
| |
|
|||| ||||||||||||| |||| ||| ||||||||| ||||||| ||||| | ||||||| |||||| |||| |||||||||||||||||| || || |
|
|
| T |
49616856 |
caaggcttccgacactaaatccacgacaaggaccacacaaaacattggaaatccatacattcccagtaccagagatcatagcaatgcaatcatcaccagt |
49616757 |
T |
|
| Q |
155 |
tccaatgttcacacttg |
171 |
Q |
| |
|
| ||||||||||||||| |
|
|
| T |
49616756 |
tgcaatgttcacacttg |
49616740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 72 - 171
Target Start/End: Original strand, 49617416 - 49617515
Alignment:
| Q |
72 |
attccatgaccaggaccacaaaaaacatctgaaattcgaacattcctagtacctgagagcatagcaatgcaatcatcgccggttccaatgttcacacttg |
171 |
Q |
| |
|
|||||||||||| ||||||||| ||||| |||||| | ||||||| |||||| |||| |||||||||||| ||||| || | | ||| ||||||||||| |
|
|
| T |
49617416 |
attccatgaccaagaccacaaagaacatatgaaatccaaacattcttagtactagagatcatagcaatgcagtcatcacccgctgcaacgttcacacttg |
49617515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 27 - 215
Target Start/End: Complemental strand, 13013173 - 13012985
Alignment:
| Q |
27 |
tcaatatcttcttcaccttcattcccaccaagacttccgacactaattccatgaccaggaccacaaaaaacatctgaaattcgaacattcctagtacctg |
126 |
Q |
| |
|
|||| ||||||||| || |||||| ||||||||||| | ||||| |||||| ||||||||||||||||| || || || | ||||||||||||||| | |
|
|
| T |
13013173 |
tcaacatcttcttctccatcattctttccaagacttccaatactaactccatgtccaggaccacaaaaaacgtcagagatccaaacattcctagtaccag |
13013074 |
T |
|
| Q |
127 |
agagcatagcaatgcaatcatcgccggttccaatgttcacacttgaaatatttattctctttgacatccctattttaataccatctgtg |
215 |
Q |
| |
|
||| ||| ||||| |||||||| ||||| || ||| || ||||| |||| |||| | ||||| | |||||||| || ||||||||| |
|
|
| T |
13013073 |
agaccattgcaatacaatcatcaccggtgccgatgctcgcacttttaatagttatcccgtttgatttgcctatttttattccatctgtg |
13012985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 32 - 215
Target Start/End: Complemental strand, 26301615 - 26301432
Alignment:
| Q |
32 |
atcttcttcaccttcattcccaccaagacttccgacactaattccatgaccaggaccacaaaaaacatctgaaattcgaacattcctagtacctgagagc |
131 |
Q |
| |
|
||||||||| |||||| | |||||||||||||| | ||||||||||||||||||||| | ||||| |||| ||||||| | ||| |||||| |
|
|
| T |
26301615 |
atcttcttcgtcttcatacttaccaagacttccgatgtttattccatgaccaggaccacaatacacatccataatttgaacattttttaaacccgagagc |
26301516 |
T |
|
| Q |
132 |
atagcaatgcaatcatcgccggttccaatgttcacacttgaaatatttattctctttgacatccctattttaataccatctgtg |
215 |
Q |
| |
|
|||| |||||| |||| ||| |||| |||||| ||||||| |||||||| | | ||||| | |||||||| || ||||||||| |
|
|
| T |
26301515 |
atagaaatgcagtcattgcccgttctaatgttaacacttgtgatatttatacccgttgactttcctattttgatgccatctgtg |
26301432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 92
Target Start/End: Complemental strand, 42844364 - 42844332
Alignment:
| Q |
60 |
cttccgacactaattccatgaccaggaccacaa |
92 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| |
|
|
| T |
42844364 |
cttccgacactaattccatgaccaggtccacaa |
42844332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University