View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10862_low_43 (Length: 227)
Name: NF10862_low_43
Description: NF10862
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10862_low_43 |
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Alignment Details
Target: chr6 (Bit Score: 217; Significance: 1e-119; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 27606270 - 27606054
Alignment:
| Q |
1 |
atgaaatacttttgccagagtcatgacctatgcagtataaaataataatgcaatttgtgtttttatttgaataaatttcaggaggccatccttggataat |
100 |
Q |
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| T |
27606270 |
atgaaatacttttgccagagtcatgacctatgcagtataaaataataatgcaatttgtgtttttatttgaataaatttcaggaggccatccttggataat |
27606171 |
T |
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| Q |
101 |
gtattcgaatgtcgacgcgtttgtaaactattctttccttggataattgaaagaaaaagaaaataccatgaagttgatgttgcaaacttttcttgttcaa |
200 |
Q |
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| T |
27606170 |
gtattcgaatgtcgacgcgtttgtaaactattctttccttggataattgaaagaaaaagaaaataccatgaagttgatgttgcaaacttttcttgttcaa |
27606071 |
T |
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| Q |
201 |
ggattattgagtctctg |
217 |
Q |
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| T |
27606070 |
ggattattgagtctctg |
27606054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 10 - 217
Target Start/End: Complemental strand, 27340518 - 27340288
Alignment:
| Q |
10 |
ttttgccagagtcatgacctatgcagtataaaataataatgcaatttgtgtttttatttgaataaattt-ca--------------------ggaggcca |
88 |
Q |
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| T |
27340518 |
ttttgccagagtcatgacctatgcagtataaaatataattgcaatttgtgtttttatttgattaaatttacaaccatgctcataattgctatggaggcca |
27340419 |
T |
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| Q |
89 |
t--ccttggataatgtattcgaatgtcgacgcgtttgtaaactattctttccttggataattgaaagaaaaagaaaataccatgaagttgatgttgcaaa |
186 |
Q |
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| T |
27340418 |
tatccttgaataatgtatttgaatgtcgacgcgtttgtaaacttttgtttccttggataatggaaataataaaaaaatatcatgaagttgttgttgctag |
27340319 |
T |
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| Q |
187 |
cttttcttgttcaaggattattgagtctctg |
217 |
Q |
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| T |
27340318 |
cttttgttgttaaaggataattgattctctg |
27340288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 10 - 217
Target Start/End: Complemental strand, 27401258 - 27401028
Alignment:
| Q |
10 |
ttttgccagagtcatgacctatgcagtataaaataataatgcaatttgtgtttttatttgaataaattt-ca--------------------ggaggcca |
88 |
Q |
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||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| ||||||| || |||||||| |
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| T |
27401258 |
ttttgccagagtcatgacctatgcagtataaaatataattgcaatttgtgtttttatttgattaaatttacaaccatgctcataattgctatggaggcca |
27401159 |
T |
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| Q |
89 |
t--ccttggataatgtattcgaatgtcgacgcgtttgtaaactattctttccttggataattgaaagaaaaagaaaataccatgaagttgatgttgcaaa |
186 |
Q |
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| T |
27401158 |
tatccttgaataatgtatttgaatgtcgacgcgtttgtaaacttttgtttccttggataatggaaataataaaaaaatatcatgaagttgttgttgctag |
27401059 |
T |
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| Q |
187 |
cttttcttgttcaaggattattgagtctctg |
217 |
Q |
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| T |
27401058 |
cttttgttgttaaaggataattgattctctg |
27401028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 149 - 210
Target Start/End: Original strand, 5083947 - 5084008
Alignment:
| Q |
149 |
gaaagaaaaagaaaataccatgaagttgatgttgcaaacttttcttgttcaaggattattga |
210 |
Q |
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| T |
5083947 |
gaaagaaaaagcaaatatctggaagttgatattgcaaacttttgttgttcaatgattgttga |
5084008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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