View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10862_low_47 (Length: 201)
Name: NF10862_low_47
Description: NF10862
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10862_low_47 |
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Alignment Details
Target: chr2 (Bit Score: 164; Significance: 7e-88; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 164; E-Value: 7e-88
Query Start/End: Original strand, 14 - 185
Target Start/End: Original strand, 5302012 - 5302183
Alignment:
| Q |
14 |
atgaagtacattaaaggcgcttacataggtattaagctgtctgatgaaacttgagaagttattatggttaaagtatcgagacaacaaatctttttcaaaa |
113 |
Q |
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| T |
5302012 |
atgaagtacattaaaggcgcttacataggtattaagctgtctgatgaaacttgagaaattattatggttaaagtatcgagacaacaaatctttttcaaaa |
5302111 |
T |
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| Q |
114 |
tcttctttattccaaacaataaaacttttatcagtagcaccccaagaaacaatggcatctgttgaaggatct |
185 |
Q |
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| T |
5302112 |
tcttctttattccaaacaataaaacttttatcagtagcaccccaagaaacaatggcatccgttgaaggatct |
5302183 |
T |
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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 14 - 115
Target Start/End: Original strand, 19100337 - 19100438
Alignment:
| Q |
14 |
atgaagtacattaaaggcgcttacataggtattaagctgtctgatg-aaacttgagaagttattatggttaaagtatcgagacaacaaatctttttcaaa |
112 |
Q |
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| T |
19100337 |
atgaagtacattaaaattgcttacatatgtattcaattgtc-gatggaaacttgagaagttattatgcttaaagtgtctaggtaacaaatcttttacaaa |
19100435 |
T |
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| Q |
113 |
atc |
115 |
Q |
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| T |
19100436 |
atc |
19100438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 3e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 43 - 167
Target Start/End: Complemental strand, 15620162 - 15620038
Alignment:
| Q |
43 |
tattaagctgtctgatgaaacttgagaagttattatggttaaagtatcgagacaacaaatctttttcaaaatcttctttattccaaacaataaaactttt |
142 |
Q |
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| T |
15620162 |
tattaagctgcctgatgaaatttgagaagttattttgcttaaagtatttaggcaacaaatcttcaccaaaatctactggattccaaacaatgaaacttct |
15620063 |
T |
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| Q |
143 |
atcagtagcaccccaagaaacaatg |
167 |
Q |
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| T |
15620062 |
attggtggcactccaagaaacaatg |
15620038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 93
Target Start/End: Complemental strand, 20681630 - 20681554
Alignment:
| Q |
16 |
gaagtacattaaaggcgcttacataggtattaagctgtctgatgaaacttgagaagttattatggttaaagtatcgag |
93 |
Q |
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| T |
20681630 |
gaagtacattaaagttgcttacatgtgtattcaa-tgtctgttgaaacttgagaagttattatgcttaaaatatcgag |
20681554 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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