View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10862_low_48 (Length: 201)

Name: NF10862_low_48
Description: NF10862
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10862_low_48
NF10862_low_48
[»] chr4 (15 HSPs)
chr4 (15-186)||(27446041-27446212)
chr4 (15-186)||(27556454-27556628)
chr4 (15-123)||(27559315-27559423)
chr4 (15-96)||(27502882-27502963)
chr4 (44-163)||(27500442-27500558)
chr4 (15-102)||(27424589-27424676)
chr4 (41-163)||(27526213-27526332)
chr4 (40-103)||(27419171-27419234)
chr4 (40-103)||(27422035-27422098)
chr4 (41-96)||(27479885-27479940)
chr4 (40-103)||(27571600-27571663)
chr4 (41-103)||(27414405-27414467)
chr4 (119-161)||(27563543-27563585)
chr4 (15-96)||(17970283-17970364)
chr4 (39-96)||(27513875-27513932)
[»] chr3 (12 HSPs)
chr3 (25-102)||(50913474-50913551)
chr3 (58-102)||(38035033-38035077)
chr3 (57-102)||(38032260-38032305)
chr3 (57-102)||(38038525-38038570)
chr3 (44-96)||(55084770-55084822)
chr3 (55-102)||(38041918-38041965)
chr3 (47-96)||(38024982-38025031)
chr3 (57-102)||(38027433-38027478)
chr3 (47-96)||(38028873-38028922)
chr3 (47-96)||(38031434-38031483)
chr3 (47-96)||(38040188-38040237)
chr3 (44-96)||(50911973-50912025)
[»] chr8 (2 HSPs)
chr8 (57-102)||(21608235-21608280)
chr8 (47-96)||(21607403-21607452)
[»] chr2 (1 HSPs)
chr2 (15-96)||(3073553-3073634)


Alignment Details
Target: chr4 (Bit Score: 160; Significance: 2e-85; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 15 - 186
Target Start/End: Complemental strand, 27446212 - 27446041
Alignment:
Q  15 atgaaggttgattcaataatgaagttggaatcacaaatcgcttcattttctctccaacataaaccgcaagatagccttttgggacttcatgcacagcctt 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||    
T  27446212 atgaaggttgattcaataatgaagttggaatcacaaatcgcttcattttttctccaacataaaccgcaagatagccttttgggacttcatccacagcctt 27446113  T
Q  115 ggaagatgatgaccgtctaatgataccaggtaagcgaaagcccattgttattatgagttacaacacactaac 186  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  27446112 ggaagatgatgaccgtctaatgataccaggtaaacgaaagcccattgttattatgagttacaacacactaac 27446041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 15 - 186
Target Start/End: Original strand, 27556454 - 27556628
Alignment:
Q  15 atgaaggttgattcaataatgaagttggaatcacaaatcgcttcattttctctccaacataaaccgcaagatagccttttgggacttcatgcacagcctt 114  Q
    |||||||||| |||||||||||| | ||||||||||||||||||||||| |||||||||||||| || |||||||||||||||||||||| |||||||||    
T  27556454 atgaaggttggttcaataatgaaatgggaatcacaaatcgcttcattttttctccaacataaactgcgagatagccttttgggacttcatccacagcctt 27556553  T
Q  115 ggaagatgatgaccgtctaatgataccaggtaagcgaaagccc--attg----ttattatgagttacaacacactaac 186  Q
    |||||| ||||||| ||||   |||||||||||| |||| |||  ||||    |||||||||||| ||||||||||||    
T  27556554 ggaagaggatgaccttcta---ataccaggtaagtgaaaacccatattgttaattattatgagttgcaacacactaac 27556628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 15 - 123
Target Start/End: Original strand, 27559315 - 27559423
Alignment:
Q  15 atgaaggttgattcaataatgaagttggaatcacaaatcgcttcattttctctccaacataaaccgcaagatagccttttgggacttcatgcacagcctt 114  Q
    |||||| |||||||||||||||| | ||||||| ||||| ||||||||| |||||||||||||| || |||||||||||||||| | ||| ||||| |||    
T  27559315 atgaagattgattcaataatgaaataggaatcagaaatctcttcattttgtctccaacataaactgcgagatagccttttgggattccatccacagtctt 27559414  T
Q  115 ggaagatga 123  Q
    |||||||||    
T  27559415 ggaagatga 27559423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 15 - 96
Target Start/End: Original strand, 27502882 - 27502963
Alignment:
Q  15 atgaaggttgattcaataatgaagttggaatcacaaatcgcttcattttctctccaacataaaccgcaagatagccttttgg 96  Q
    |||||| |||||||||  ||||  ||||||||||||| |||||||| |||||||| |||||||| |||||||| ||||||||    
T  27502882 atgaagtttgattcaaatatgacattggaatcacaaaccgcttcatcttctctcctacataaacggcaagatatccttttgg 27502963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 44 - 163
Target Start/End: Original strand, 27500442 - 27500558
Alignment:
Q  44 atcacaaatcgcttcattttctctccaacataaaccgcaagatagccttttgggacttcatgcacagccttggaagatgatgaccgtctaatgataccag 143  Q
    |||||||||||||||||||||||||| || || || || ||||| |||||||| || ||   |||||  || ||||||||||||| | | ||||||| ||    
T  27500442 atcacaaatcgcttcattttctctcctacgtacactgctagatatccttttggtacgtc---cacagattttgaagatgatgaccttttgatgatactag 27500538  T
Q  144 gtaagcgaaagcccattgtt 163  Q
    |||| ||||| |||||||||    
T  27500539 gtaaacgaaaacccattgtt 27500558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 15 - 102
Target Start/End: Original strand, 27424589 - 27424676
Alignment:
Q  15 atgaaggttgattcaataatgaagttggaatcacaaatcgcttcattttctctccaacataaaccgcaagatagccttttgggacttc 102  Q
    |||||||||| |||||  ||||   |||||||||||| ||| ||||||  ||||||||||| || || ||||||||||||||||||||    
T  27424589 atgaaggttggttcaagtatgatactggaatcacaaaccgcctcatttgatctccaacatagactgcgagatagccttttgggacttc 27424676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 41 - 163
Target Start/End: Original strand, 27526213 - 27526332
Alignment:
Q  41 ggaatcacaaatcgcttcattttctctccaacataaaccgcaagatagccttttgggacttcatgcacagccttggaagatgatgaccgtctaatgatac 140  Q
    ||||||||||| ||||||||||||||||||||||| || || ||||| || ||||| |   |||  ||| | || |||||||||| || | | |||||||    
T  27526213 ggaatcacaaaccgcttcattttctctccaacatacactgctagatatccctttggaa---catcgacaccttttgaagatgatgcccttttgatgatac 27526309  T
Q  141 caggtaagcgaaagcccattgtt 163  Q
     |||||| ||||| |||||||||    
T  27526310 taggtaaacgaaaacccattgtt 27526332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 40 - 103
Target Start/End: Original strand, 27419171 - 27419234
Alignment:
Q  40 tggaatcacaaatcgcttcattttctctccaacataaaccgcaagatagccttttgggacttca 103  Q
    ||||||||| || ||| ||||| | ||||||||||| || || |||||||||||||||||||||    
T  27419171 tggaatcacgaaccgcctcattctatctccaacatagactgcgagatagccttttgggacttca 27419234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 40 - 103
Target Start/End: Original strand, 27422035 - 27422098
Alignment:
Q  40 tggaatcacaaatcgcttcattttctctccaacataaaccgcaagatagccttttgggacttca 103  Q
    ||||||||| || || |||||| | ||||||||||| || || |||||||||||||||||||||    
T  27422035 tggaatcacgaaccgtttcattctatctccaacatagactgcgagatagccttttgggacttca 27422098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 41 - 96
Target Start/End: Complemental strand, 27479940 - 27479885
Alignment:
Q  41 ggaatcacaaatcgcttcattttctctccaacataaaccgcaagatagccttttgg 96  Q
    ||||||||||| ||||||||||||||||| || || || || ||||||||||||||    
T  27479940 ggaatcacaaaacgcttcattttctctcctacgtatactgctagatagccttttgg 27479885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 40 - 103
Target Start/End: Complemental strand, 27571663 - 27571600
Alignment:
Q  40 tggaatcacaaatcgcttcattttctctccaacataaaccgcaagatagccttttgggacttca 103  Q
    ||||||||| || ||| ||||| | ||||||||||| || || |||||||||||||||||||||    
T  27571663 tggaatcacgaaccgcctcattctatctccaacatagactgcgagatagccttttgggacttca 27571600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 103
Target Start/End: Original strand, 27414405 - 27414467
Alignment:
Q  41 ggaatcacaaatcgcttcattttctctccaacataaaccgcaagatagccttttgggacttca 103  Q
    ||||||||||| ||  ||||||| |||||||| || || ||||||||||||||||| ||||||    
T  27414405 ggaatcacaaaccgtctcattttatctccaacgtagactgcaagatagccttttggcacttca 27414467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 161
Target Start/End: Original strand, 27563543 - 27563585
Alignment:
Q  119 gatgatgaccgtctaatgataccaggtaagcgaaagcccattg 161  Q
    |||||||||| |||||||||||||||||| ||||| |||||||    
T  27563543 gatgatgaccttctaatgataccaggtaaacgaaaacccattg 27563585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 15 - 96
Target Start/End: Complemental strand, 17970364 - 17970283
Alignment:
Q  15 atgaaggttgattcaataatgaagttggaatcacaaatcgcttcattttctctccaacataaaccgcaagatagccttttgg 96  Q
    |||||| ||| |||||  |||| || || |||||||| |||||||||| ||||||||| || ||||||||||| || |||||    
T  17970364 atgaagtttggttcaagtatgacgtagggatcacaaaccgcttcatttcctctccaacgtacaccgcaagatatccctttgg 17970283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 39 - 96
Target Start/End: Original strand, 27513875 - 27513932
Alignment:
Q  39 ttggaatcacaaatcgcttcattttctctccaacataaaccgcaagatagccttttgg 96  Q
    |||| |||||||| ||||||||||||||||| ||||| || || ||||| ||||||||    
T  27513875 ttgggatcacaaaccgcttcattttctctcctacatacactgctagatatccttttgg 27513932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 25 - 102
Target Start/End: Complemental strand, 50913551 - 50913474
Alignment:
Q  25 attcaataatgaagttggaatcacaaatcgcttcattttctctccaacataaaccgcaagatagccttttgggacttc 102  Q
    |||||| |||||  |||||||||  || | ||||||||||||||||||||| || |||||||||||||||||||||||    
T  50913551 attcaagaatgatattggaatcaagaacctcttcattttctctccaacatacactgcaagatagccttttgggacttc 50913474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 58 - 102
Target Start/End: Complemental strand, 38035077 - 38035033
Alignment:
Q  58 cattttctctccaacataaaccgcaagatagccttttgggacttc 102  Q
    |||||||||||||||||| |||||||||| |||||||||||||||    
T  38035077 cattttctctccaacatacaccgcaagatggccttttgggacttc 38035033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 57 - 102
Target Start/End: Complemental strand, 38032305 - 38032260
Alignment:
Q  57 tcattttctctccaacataaaccgcaagatagccttttgggacttc 102  Q
    ||||||||||||||||||| || ||||||||||||||||| |||||    
T  38032305 tcattttctctccaacatacactgcaagatagccttttggaacttc 38032260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 57 - 102
Target Start/End: Complemental strand, 38038570 - 38038525
Alignment:
Q  57 tcattttctctccaacataaaccgcaagatagccttttgggacttc 102  Q
    ||||||||||||||||||| || ||||||| |||||||||||||||    
T  38038570 tcattttctctccaacatacactgcaagatggccttttgggacttc 38038525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 44 - 96
Target Start/End: Complemental strand, 55084822 - 55084770
Alignment:
Q  44 atcacaaatcgcttcattttctctccaacataaaccgcaagatagccttttgg 96  Q
    |||||||| ||||||||||||||||||||||| || |||||| | ||||||||    
T  55084822 atcacaaaccgcttcattttctctccaacatacactgcaagacacccttttgg 55084770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 55 - 102
Target Start/End: Complemental strand, 38041965 - 38041918
Alignment:
Q  55 cttcattttctctccaacataaaccgcaagatagccttttgggacttc 102  Q
    |||||||| |||||||||||| ||||| | ||||||||||||||||||    
T  38041965 cttcatttcctctccaacatacaccgctaaatagccttttgggacttc 38041918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 47 - 96
Target Start/End: Original strand, 38024982 - 38025031
Alignment:
Q  47 acaaatcgcttcattttctctccaacataaaccgcaagatagccttttgg 96  Q
    ||||| |||||||||| |||||||||||| || ||||||||||| |||||    
T  38024982 acaaaccgcttcatttgctctccaacatatactgcaagatagccctttgg 38025031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 57 - 102
Target Start/End: Complemental strand, 38027478 - 38027433
Alignment:
Q  57 tcattttctctccaacataaaccgcaagatagccttttgggacttc 102  Q
    ||||||||||||||||||| || ||||||| ||||||||| |||||    
T  38027478 tcattttctctccaacatacactgcaagatggccttttggaacttc 38027433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 47 - 96
Target Start/End: Original strand, 38028873 - 38028922
Alignment:
Q  47 acaaatcgcttcattttctctccaacataaaccgcaagatagccttttgg 96  Q
    |||||||||||||||| ||||||||| || || ||||||||||| |||||    
T  38028873 acaaatcgcttcatttgctctccaacgtacactgcaagatagccctttgg 38028922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 47 - 96
Target Start/End: Original strand, 38031434 - 38031483
Alignment:
Q  47 acaaatcgcttcattttctctccaacataaaccgcaagatagccttttgg 96  Q
    ||||| |||||||||| |||||||||||| || ||||||||||| |||||    
T  38031434 acaaaccgcttcatttgctctccaacatatactgcaagatagccctttgg 38031483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 47 - 96
Target Start/End: Original strand, 38040188 - 38040237
Alignment:
Q  47 acaaatcgcttcattttctctccaacataaaccgcaagatagccttttgg 96  Q
    |||||||||||||||| ||||||||| || || ||||||||||| |||||    
T  38040188 acaaatcgcttcatttgctctccaacgtacactgcaagatagccctttgg 38040237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 96
Target Start/End: Original strand, 50911973 - 50912025
Alignment:
Q  44 atcacaaatcgcttcattttctctccaacataaaccgcaagatagccttttgg 96  Q
    |||||||| || ||||| || ||||||||||| |||||||||||||| |||||    
T  50911973 atcacaaaccgtttcatcttgtctccaacatataccgcaagatagccctttgg 50912025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 57 - 102
Target Start/End: Complemental strand, 21608280 - 21608235
Alignment:
Q  57 tcattttctctccaacataaaccgcaagatagccttttgggacttc 102  Q
    ||||||||||||||||||| || ||||||||||||||||| |||||    
T  21608280 tcattttctctccaacatacactgcaagatagccttttggaacttc 21608235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 47 - 96
Target Start/End: Original strand, 21607403 - 21607452
Alignment:
Q  47 acaaatcgcttcattttctctccaacataaaccgcaagatagccttttgg 96  Q
    ||||| |||||||||| |||||||||||| ||||||||||| || |||||    
T  21607403 acaaaccgcttcatttgctctccaacatataccgcaagatatccctttgg 21607452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 15 - 96
Target Start/End: Complemental strand, 3073634 - 3073553
Alignment:
Q  15 atgaaggttgattcaataatgaagttggaatcacaaatcgcttcattttctctccaacataaaccgcaagatagccttttgg 96  Q
    |||||| ||| |||||  |||| || || |||||||| |||||||||| ||||||||| || ||||||||||| || |||||    
T  3073634 atgaagtttggttcaagtatgacgtagggatcacaaaccgcttcatttcctctccaacgtacaccgcaagatatccctttgg 3073553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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