View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10862_low_7 (Length: 418)
Name: NF10862_low_7
Description: NF10862
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10862_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 18 - 411
Target Start/End: Original strand, 42270855 - 42271248
Alignment:
| Q |
18 |
aattattacaattgtgctatatgttatgatgaaaactagtctcaatatcacgaaataatgtgcgttagaatttcagaacacaggnnnnnnnnttcatatg |
117 |
Q |
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| T |
42270855 |
aattattacaattgtgctatatgttataatgaaaactagtctcaatatcacgaaataatgtgcgttagaatttcagtacaaaggaaaaaaaattcatatg |
42270954 |
T |
|
| Q |
118 |
ctattggctgaaaacatggatctgtccaatgatattattttgtgacacttcttaatggaaccccttcatgacagtaaacaatttcctaattattaataaa |
217 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42270955 |
ctattgactgaaaacatggatctgtccaatgatattattttgtgacacttcttaatggaaccccttcatgacagtaaacaatttcctaattattaataaa |
42271054 |
T |
|
| Q |
218 |
tatctgatgtttttattactatatattattgaaactggcaagaaattttattgctatataagagacaaatcttttacagttttaggttagaaattttgtg |
317 |
Q |
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||||||||||||||| | ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42271055 |
tatctgatgtttttactgctatatattattgaaactggcaaaaaattttattgctatataagagacaaatcttttacagttttaggttagaaattttgtg |
42271154 |
T |
|
| Q |
318 |
aagtttaagggtgttttaagttaggtatatagggttaaagtatactatggnnnnnnncagtgtgagtaaataatattcttctaggcctttgctt |
411 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| |
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| T |
42271155 |
aagtttaagggtgttttaagttaggtatatagggttaaagtatacgatggtttttttcagtgtgagtaaataatattcttctaggcctttgctt |
42271248 |
T |
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