View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10863_4 (Length: 341)

Name: NF10863_4
Description: NF10863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10863_4
NF10863_4
[»] chr1 (1 HSPs)
chr1 (8-341)||(40307523-40307856)


Alignment Details
Target: chr1 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 8 - 341
Target Start/End: Complemental strand, 40307856 - 40307523
Alignment:
Q  8 ggcaaatggaggggaacagatgttgcaattaagagaataaaaaatagttgttttgctggtagattttccgagcaagagcggttggtaagtatctattgag 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  40307856 ggcaaatggaggggaacagatgttgcaattaagagaataaaaaatagttgttttgctggtagattttccgagcaagagcggttggtaagtatccattgag 40307757  T
Q  108 tataaagtataaacaaattgaatttattagtgttgtttatttagtttttctttcaaacttatactataaaatttcttataaaaagttattcatggaaaag 207  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||    
T  40307756 tataaagtataaacaaattgactttattagtgttgtttatttagtttttctttcaaacttatattataaaatttcttataaaaagttattcatggtaaag 40307657  T
Q  208 tgcttccatgatgaatgaatggggaagggaaaatctcatatttacaggccattaacattaattcacatataattatttttctgtatgaggtttcttagtt 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40307656 tgcttccatgatgaatgaatggggaagggaaaatctcatatttacaggccattaacattaattcacatataattatttttctgtatgaggtttcttagtt 40307557  T
Q  308 atatgcttattgagtttgtttctctagactaaag 341  Q
    ||||||||||||||||||||||||||||||||||    
T  40307556 atatgcttattgagtttgtttctctagactaaag 40307523  T

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