View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10863_6 (Length: 320)

Name: NF10863_6
Description: NF10863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10863_6
NF10863_6
[»] chr5 (7 HSPs)
chr5 (1-296)||(38816407-38816702)
chr5 (186-297)||(38821817-38821928)
chr5 (7-56)||(8420075-8420124)
chr5 (2-54)||(9929668-9929720)
chr5 (1-54)||(22423764-22423818)
chr5 (26-56)||(24906250-24906280)
chr5 (77-115)||(35665559-35665597)
[»] chr1 (1 HSPs)
chr1 (1-54)||(48547938-48547991)
[»] chr6 (5 HSPs)
chr6 (7-54)||(426478-426525)
chr6 (7-54)||(5732474-5732521)
chr6 (26-56)||(34073276-34073306)
chr6 (13-54)||(2117134-2117175)
chr6 (18-54)||(8805524-8805560)
[»] chr2 (6 HSPs)
chr2 (7-54)||(19536361-19536408)
chr2 (7-54)||(19574031-19574078)
chr2 (7-53)||(18255945-18255991)
chr2 (7-53)||(34691770-34691816)
chr2 (7-53)||(34714182-34714228)
chr2 (18-54)||(42511322-42511358)
[»] chr3 (4 HSPs)
chr3 (18-56)||(4466538-4466576)
chr3 (26-56)||(5440965-5440995)
chr3 (18-56)||(13807237-13807275)
chr3 (18-54)||(27505334-27505370)
[»] chr7 (2 HSPs)
chr7 (26-55)||(17852091-17852120)
chr7 (26-54)||(15680900-15680928)
[»] scaffold0450 (1 HSPs)
scaffold0450 (26-54)||(8564-8592)
[»] scaffold0027 (1 HSPs)
scaffold0027 (8-56)||(46731-46778)
[»] chr4 (2 HSPs)
chr4 (10-54)||(18844423-18844467)
chr4 (18-54)||(28470448-28470484)


Alignment Details
Target: chr5 (Bit Score: 288; Significance: 1e-161; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 296
Target Start/End: Complemental strand, 38816702 - 38816407
Alignment:
Q  1 ggtgtggtgtcggtgtcggacatggctaattcgaggagtgtccgtgcttcatagttatattcgtgaatcgtgatagtgttggagactgacatctgttgga 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38816702 ggtgtggtgtcggtgtcggacatggctaattcgaggagtgtccgtgattcatagttatattcgtgaatcgtgatagtgttggagactgacatctgttgga 38816603  T
Q  101 cactggacacacctttaatatgaagtctcggtgctagatatttatgggagatatttatttgtgaagtttctttctaaggctttcttgttgtgtgttcagg 200  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38816602 cactgcacacacctttaatatgaagtctcggtgctagatatttatgggagatatttatttgtgaagtttctttctaaggctttcttgttgtgtgttcagg 38816503  T
Q  201 tgaagatttgagtgatcttgctgtggaacattcaatttgcccttctaaagatgaaggaggaatgcttgggtgggtgagaaagggacaaatggtatg 296  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38816502 tgaagatttgagtgatcttgctgtggaacattcaatttgcccttctaaagatgaaggaggaatgcttgggtgggtgagaaagggacaaatggtatg 38816407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 186 - 297
Target Start/End: Complemental strand, 38821928 - 38821817
Alignment:
Q  186 tgttgtgtgttcaggtgaagatttgagtgatcttgctgtggaacattcaatttgcccttctaaagatgaaggaggaatgcttgggtgggtgagaaaggga 285  Q
    |||||||||| |||||||||||||||| ||||||||||||||  ||||  | ||||| |||||||| |||||||||| ||||||||||||||||||||||    
T  38821928 tgttgtgtgtccaggtgaagatttgagcgatcttgctgtggactattcggtgtgcccatctaaagaagaaggaggaaggcttgggtgggtgagaaaggga 38821829  T
Q  286 caaatggtatga 297  Q
    ||||||||||||    
T  38821828 caaatggtatga 38821817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 7 - 56
Target Start/End: Original strand, 8420075 - 8420124
Alignment:
Q  7 gtgtcggtgtcggacatggctaattcgaggagtgtccgtgcttcatagtt 56  Q
    |||||||||||||||  | |||||||||||||| ||||||||||||||||    
T  8420075 gtgtcggtgtcggacgcgcctaattcgaggagtatccgtgcttcatagtt 8420124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 54
Target Start/End: Original strand, 9929668 - 9929720
Alignment:
Q  2 gtgtggtgtcggtgtcggacatggctaattcgaggagtgtccgtgcttcatag 54  Q
    |||| |||||||| ||||||| | ||||||||||||||||| |||||||||||    
T  9929668 gtgtcgtgtcggtatcggacacgactaattcgaggagtgtctgtgcttcatag 9929720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 22423818 - 22423764
Alignment:
Q  1 ggtgtggtgtcggtgtc-ggacatggctaattcgaggagtgtccgtgcttcatag 54  Q
    ||||| ||||||||||| ||||| | ||||| |||||||||||||||||||||||    
T  22423818 ggtgtcgtgtcggtgtctggacacgcctaatccgaggagtgtccgtgcttcatag 22423764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 56
Target Start/End: Complemental strand, 24906280 - 24906250
Alignment:
Q  26 ctaattcgaggagtgtccgtgcttcatagtt 56  Q
    |||||||||||||||||||||||||||||||    
T  24906280 ctaattcgaggagtgtccgtgcttcatagtt 24906250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 77 - 115
Target Start/End: Complemental strand, 35665597 - 35665559
Alignment:
Q  77 tgttggagactgacatctgttggacactggacacacctt 115  Q
    ||||||| |||||||| ||||||||||||||||||||||    
T  35665597 tgttggaaactgacatgtgttggacactggacacacctt 35665559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 48547991 - 48547938
Alignment:
Q  1 ggtgtggtgtcggtgtcggacatggctaattcgaggagtgtccgtgcttcatag 54  Q
    ||||| |||||||||||||| | | |||||||||||||||||||||||||||||    
T  48547991 ggtgtcgtgtcggtgtcggatacgcctaattcgaggagtgtccgtgcttcatag 48547938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 7 - 54
Target Start/End: Complemental strand, 426525 - 426478
Alignment:
Q  7 gtgtcggtgtcggacatggctaattcgaggagtgtccgtgcttcatag 54  Q
    |||||||||||||||| | |||||  ||||||||||||||||||||||    
T  426525 gtgtcggtgtcggacacgcctaatctgaggagtgtccgtgcttcatag 426478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 7 - 54
Target Start/End: Complemental strand, 5732521 - 5732474
Alignment:
Q  7 gtgtcggtgtcggacatggctaattcgaggagtgtccgtgcttcatag 54  Q
    |||||||||||||||| | ||||| |||||||||||| ||||||||||    
T  5732521 gtgtcggtgtcggacacgcctaatccgaggagtgtccatgcttcatag 5732474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 56
Target Start/End: Complemental strand, 34073306 - 34073276
Alignment:
Q  26 ctaattcgaggagtgtccgtgcttcatagtt 56  Q
    |||||||||||||||||||||||||||||||    
T  34073306 ctaattcgaggagtgtccgtgcttcatagtt 34073276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 54
Target Start/End: Original strand, 2117134 - 2117175
Alignment:
Q  13 gtgtcggacatggctaattcgaggagtgtccgtgcttcatag 54  Q
    |||||||||||| |||||  ||||||||||||||||||||||    
T  2117134 gtgtcggacatgcctaatcggaggagtgtccgtgcttcatag 2117175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 54
Target Start/End: Complemental strand, 8805560 - 8805524
Alignment:
Q  18 ggacatggctaattcgaggagtgtccgtgcttcatag 54  Q
    ||||||| ||||| |||||||||||||||||||||||    
T  8805560 ggacatgcctaatccgaggagtgtccgtgcttcatag 8805524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 7 - 54
Target Start/End: Complemental strand, 19536408 - 19536361
Alignment:
Q  7 gtgtcggtgtcggacatggctaattcgaggagtgtccgtgcttcatag 54  Q
    |||||||||||||||| | ||||| |||||||||||| ||||||||||    
T  19536408 gtgtcggtgtcggacacgcctaatccgaggagtgtccatgcttcatag 19536361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 7 - 54
Target Start/End: Original strand, 19574031 - 19574078
Alignment:
Q  7 gtgtcggtgtcggacatggctaattcgaggagtgtccgtgcttcatag 54  Q
    ||||||||||||||||   |||||||||||||||||| ||||||||||    
T  19574031 gtgtcggtgtcggacacacctaattcgaggagtgtccatgcttcatag 19574078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 7 - 53
Target Start/End: Complemental strand, 18255991 - 18255945
Alignment:
Q  7 gtgtcggtgtcggacatggctaattcgaggagtgtccgtgcttcata 53  Q
    |||||||||||||||| | ||||| | ||||||||||||||||||||    
T  18255991 gtgtcggtgtcggacacgcctaatccaaggagtgtccgtgcttcata 18255945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 7 - 53
Target Start/End: Complemental strand, 34691816 - 34691770
Alignment:
Q  7 gtgtcggtgtcggacatggctaattcgaggagtgtccgtgcttcata 53  Q
    |||||||||||||||| | ||||| ||||||||||||||| ||||||    
T  34691816 gtgtcggtgtcggacacgcctaatccgaggagtgtccgtgtttcata 34691770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 7 - 53
Target Start/End: Complemental strand, 34714228 - 34714182
Alignment:
Q  7 gtgtcggtgtcggacatggctaattcgaggagtgtccgtgcttcata 53  Q
    |||||||||||||||| | ||||| ||||||||||||||| ||||||    
T  34714228 gtgtcggtgtcggacacgcctaatccgaggagtgtccgtgtttcata 34714182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 54
Target Start/End: Complemental strand, 42511358 - 42511322
Alignment:
Q  18 ggacatggctaattcgaggagtgtccgtgcttcatag 54  Q
    ||||| ||||||| |||||||||||||||||||||||    
T  42511358 ggacacggctaatccgaggagtgtccgtgcttcatag 42511322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 56
Target Start/End: Complemental strand, 4466576 - 4466538
Alignment:
Q  18 ggacatggctaattcgaggagtgtccgtgcttcatagtt 56  Q
    ||||| |||| ||||||||||||||||||||||||||||    
T  4466576 ggacacggcttattcgaggagtgtccgtgcttcatagtt 4466538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 56
Target Start/End: Complemental strand, 5440995 - 5440965
Alignment:
Q  26 ctaattcgaggagtgtccgtgcttcatagtt 56  Q
    |||||||||||||||||||||||||||||||    
T  5440995 ctaattcgaggagtgtccgtgcttcatagtt 5440965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 56
Target Start/End: Original strand, 13807237 - 13807275
Alignment:
Q  18 ggacatggctaattcgaggagtgtccgtgcttcatagtt 56  Q
    ||||||| ||||||||||||||||||||| |||||||||    
T  13807237 ggacatgcctaattcgaggagtgtccgtgtttcatagtt 13807275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 54
Target Start/End: Original strand, 27505334 - 27505370
Alignment:
Q  18 ggacatggctaattcgaggagtgtccgtgcttcatag 54  Q
    ||||||| ||||| |||||||||||||||||||||||    
T  27505334 ggacatgcctaatccgaggagtgtccgtgcttcatag 27505370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 55
Target Start/End: Original strand, 17852091 - 17852120
Alignment:
Q  26 ctaattcgaggagtgtccgtgcttcatagt 55  Q
    ||||||||||||||||||||||||||||||    
T  17852091 ctaattcgaggagtgtccgtgcttcatagt 17852120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 54
Target Start/End: Original strand, 15680900 - 15680928
Alignment:
Q  26 ctaattcgaggagtgtccgtgcttcatag 54  Q
    |||||||||||||||||||||||||||||    
T  15680900 ctaattcgaggagtgtccgtgcttcatag 15680928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0450 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0450
Description:

Target: scaffold0450; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 54
Target Start/End: Complemental strand, 8592 - 8564
Alignment:
Q  26 ctaattcgaggagtgtccgtgcttcatag 54  Q
    |||||||||||||||||||||||||||||    
T  8592 ctaattcgaggagtgtccgtgcttcatag 8564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 56
Target Start/End: Original strand, 46731 - 46778
Alignment:
Q  8 tgtcggtgtcggacatggctaattcgaggagtgtccgtgcttcatagtt 56  Q
    ||||||||||| ||| | ||||| |||||||||||||||||||||||||    
T  46731 tgtcggtgtcg-acacgcctaatccgaggagtgtccgtgcttcatagtt 46778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 10 - 54
Target Start/End: Complemental strand, 18844467 - 18844423
Alignment:
Q  10 tcggtgtcggacatggctaattcgaggagtgtccgtgcttcatag 54  Q
    ||||||||||||| | ||||| |||| ||||||||||||||||||    
T  18844467 tcggtgtcggacacgcctaatccgagaagtgtccgtgcttcatag 18844423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 54
Target Start/End: Original strand, 28470448 - 28470484
Alignment:
Q  18 ggacatggctaattcgaggagtgtccgtgcttcatag 54  Q
    ||||||| ||||| |||||||||||||||||||||||    
T  28470448 ggacatgcctaatccgaggagtgtccgtgcttcatag 28470484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University