View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10864_1 (Length: 378)
Name: NF10864_1
Description: NF10864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10864_1 |
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Alignment Details
Target: chr5 (Bit Score: 341; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 1 - 365
Target Start/End: Complemental strand, 1167498 - 1167134
Alignment:
| Q |
1 |
aaaagtacgatagatttctcttcgttttacggacacgaaaaccaaaagcgacaagtgaagatataattgaaaatataaaattatataatcgatcaaaaag |
100 |
Q |
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| T |
1167498 |
aaaagtacgatagatttctcgtcgtttcacggacacgaaaaccaaaagcgacaagtgaagatataattgaaaatataaaattatataatcgatcaaaaag |
1167399 |
T |
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| Q |
101 |
atacaatttaggagtatttaatgaagtctaacccaaacaagtcttttagcttgtaaagtttccttactttcatgcatttttgtttatattaccacaaacc |
200 |
Q |
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| T |
1167398 |
atacaatttaggagtatttaatgaagtctaacccaaataagtcttttagcttgtaaagtttccttacttttatgcatttttgtttatattaccacaaact |
1167299 |
T |
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| Q |
201 |
cttgctgtcttgcaaaccctaactaagaaccagaagacaattgaacgcctaaaaatattgcatgtctctgtgtcaatacaacaattaaaatacttttaca |
300 |
Q |
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| T |
1167298 |
cttgctgtcttgcaaaccctaactaagaaccagaagacaattgaacgcctaaaaatattgcatgtctctgtgtcaatacaacaattaaaatatttttaca |
1167199 |
T |
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| Q |
301 |
ccgctaatgactatcaaatctaggacaatggcctcaagtgtcctcagtcctcacgttaggatatt |
365 |
Q |
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| T |
1167198 |
ccgctaatgactatcaaatctaggacaatggcctcaagtgtcctcagtcctcacgttaggatatt |
1167134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 95
Target Start/End: Complemental strand, 3924029 - 3923984
Alignment:
| Q |
50 |
gacaagtgaagatataattgaaaatataaaattatataatcgatca |
95 |
Q |
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| T |
3924029 |
gacaagtggagatataattgaaaatctaaaagtatataattgatca |
3923984 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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