View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10864_3 (Length: 360)
Name: NF10864_3
Description: NF10864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10864_3 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 28 - 360
Target Start/End: Complemental strand, 8885807 - 8885480
Alignment:
| Q |
28 |
atattttaatctgtacgaaatgaacaaattaaatgtaacatttgctgtgaaacgaagggaggagaattaattttaactttcattggcgatttagcacgtt |
127 |
Q |
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| T |
8885807 |
atattttaatctgtatgaaatgaacaaat-----gtaacatttgttgtgaaatgaagggaggagaattaattttaactttcgttggcgatttagcacgtt |
8885713 |
T |
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| Q |
128 |
ccataatggtannnnnnnncttctctttcatggcgtattatatattattttcttgtcctaattgaatttattttattgatttaccactaaccacactaaa |
227 |
Q |
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| T |
8885712 |
ccataatggtattttttttcttctctttcatggcgtattatatattattttcttgtcctaattgaatttattttattgatctaccactaaccacattaaa |
8885613 |
T |
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| Q |
228 |
agattgatacttcagttctttgtttcaagaattagaaagaggagaagaagatgccgaagaaccttaaaattatattcgttttaatatagatttttgtgga |
327 |
Q |
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| T |
8885612 |
agattgatacttcagttctttgtttcaagaattagaaagaggagaagaagatgccgaagaaccctaaaattatattggttttaatataaatttttgtgga |
8885513 |
T |
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| Q |
328 |
gtgatatagtgattttgtggtttgagatagaaa |
360 |
Q |
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| T |
8885512 |
gtgataaagtgattttgtggtttgagatagaaa |
8885480 |
T |
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