View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10864_4 (Length: 329)

Name: NF10864_4
Description: NF10864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10864_4
NF10864_4
[»] chr3 (7 HSPs)
chr3 (1-317)||(33618406-33618722)
chr3 (1-229)||(33609231-33609459)
chr3 (1-118)||(33588515-33588632)
chr3 (1-118)||(33595687-33595804)
chr3 (1-118)||(33602818-33602935)
chr3 (1-231)||(33627621-33627851)
chr3 (159-225)||(33622758-33622824)


Alignment Details
Target: chr3 (Bit Score: 301; Significance: 1e-169; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 1 - 317
Target Start/End: Original strand, 33618406 - 33618722
Alignment:
Q  1 aatcccgtttttccaacagcttacagggatcaacattgtagccttttattcacccaacctctttcactctgtgggttttggacacgacggagctttactt 100  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33618406 aatcccgtttttccaacagcttacagggatcaatattgtagccttttattcacccaacctctttcactctgtgggttttggacacgacggagctttactt 33618505  T
Q  101 tccgccattatacttggatctgttagccttttgtctaatcttatctctgctggtattgttgatcgaattggtcgaagattcttgttcatatctgggggaa 200  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33618506 tccgccattatacttggatctgttagccttttgtctaaccttatctctgctggtattgttgatcgaattggtcgaagattcttgttcatatctgggggaa 33618605  T
Q  201 ttatgatgcttgtctgcttggtaagcgaactaaacctatctatccttttgttagctaatatattttgtgtccctatgaaatatatttttaagttgtttaa 300  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  33618606 ttatgatgcttgtctgcttggtaagcgaactaaacctatctatctttttgttagttaatatattttgtgtccctatgaaatatatttttaagttgtttaa 33618705  T
Q  301 catcattgcgtcatttt 317  Q
    |||||||||||||||||    
T  33618706 catcattgcgtcatttt 33618722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 33609231 - 33609459
Alignment:
Q  1 aatcccgtttttccaacagcttacagggatcaacattgtagccttttattcacccaacctctttcactctgtgggttttggacacgacggagctttactt 100  Q
    |||||| ||||||||||| ||||| ||||||||||| || || || |||||||| |||||||| || |||||||| || ||||  ||||| |||||| ||    
T  33609231 aatcccatttttccaacaacttaccgggatcaacatcgtcgctttctattcacctaacctcttccattctgtgggcttgggacgtgacggcgctttaatt 33609330  T
Q  101 tccgccattatacttggatctgttagccttttgtctaatcttatctctgctggtattgttgatcgaattggtcgaagattcttgttcatatctgggggaa 200  Q
    ||||||||| |||||||||| ||||||||| |||||||  |||||||||| ||||||||||||||| |||||||||||||| |||||||| ||||||| |    
T  33609331 tccgccattgtacttggatccgttagccttgtgtctaacgttatctctgccggtattgttgatcgatttggtcgaagattcctgttcataactgggggta 33609430  T
Q  201 ttatgatgcttgtctgcttggtaagcgaa 229  Q
    |||||||| ||||||||||||||||||||    
T  33609431 ttatgatgtttgtctgcttggtaagcgaa 33609459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 33588515 - 33588632
Alignment:
Q  1 aatcccgtttttccaacagcttacagggatcaacattgtagccttttattcacccaacctctttcactctgtgggttttggacacgacggagctttactt 100  Q
    |||||| ||||| |||||| ||||||||||||||||||| || || |||||||| ||||||||||| ||||||||||| ||| || |||| |||||||||    
T  33588515 aatcccattttttcaacagtttacagggatcaacattgtcgctttctattcaccaaacctctttcaatctgtgggtttaggaaacaacggtgctttactt 33588614  T
Q  101 tccgccattatacttgga 118  Q
    || ||| |||| ||||||    
T  33588615 tctgccgttattcttgga 33588632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 33595687 - 33595804
Alignment:
Q  1 aatcccgtttttccaacagcttacagggatcaacattgtagccttttattcacccaacctctttcactctgtgggttttggacacgacggagctttactt 100  Q
    |||||| ||||| |||||| ||||||||||||||||||| || || |||||||| ||||||||||| ||||||||||| ||| || |||| |||||||||    
T  33595687 aatcccattttttcaacagtttacagggatcaacattgtcgctttctattcaccaaacctctttcaatctgtgggtttaggaaacaacggtgctttactt 33595786  T
Q  101 tccgccattatacttgga 118  Q
    || ||| |||| ||||||    
T  33595787 tctgccgttattcttgga 33595804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 33602818 - 33602935
Alignment:
Q  1 aatcccgtttttccaacagcttacagggatcaacattgtagccttttattcacccaacctctttcactctgtgggttttggacacgacggagctttactt 100  Q
    |||||| ||||| |||||| ||||||||||||||||||| || || |||||||| ||||||||||| ||||||||||| ||| || |||| |||||||||    
T  33602818 aatcccattttttcaacagtttacagggatcaacattgtcgctttctattcaccaaacctctttcaatctgtgggtttaggaaacaacggtgctttactt 33602917  T
Q  101 tccgccattatacttgga 118  Q
    || ||| |||| ||||||    
T  33602918 tctgccgttattcttgga 33602935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 33627621 - 33627851
Alignment:
Q  1 aatcccgtttttccaacagcttacagggatcaacattgtagccttttattcacccaacctctttcactctgtgggttttggacacgacggagctttactt 100  Q
    |||||||||||| |||||  ||||||||||||||||| | || || |||||||| |||||||||   ||| |||| || |||||| | |   ||||||||    
T  33627621 aatcccgttttttcaacaagttacagggatcaacattattgctttctattcacctaacctctttagatctttggggttgggacacaatgcttctttactt 33627720  T
Q  101 tccgccattatacttggatctgttagccttttgtctaatcttatctctgctggtattgttgatcgaattggtcgaagattcttgttcatatctgggggaa 200  Q
    || || |||||||||||   ||||| ||||   ||||  ||  ||||| ||  | || |||||||| ||||||||||||||||||||||  ||||||| |    
T  33627721 tctgcgattatacttggcgttgttaaccttgcatctatcctcgtctcttctactgttattgatcgatttggtcgaagattcttgttcattactgggggta 33627820  T
Q  201 ttatgatgcttgtctgcttggtaagcgaact 231  Q
    |||| ||| |||||||||||||||| |||||    
T  33627821 ttatcatgtttgtctgcttggtaagtgaact 33627851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 159 - 225
Target Start/End: Original strand, 33622758 - 33622824
Alignment:
Q  159 ttgatcgaattggtcgaagattcttgttcatatctgggggaattatgatgcttgtctgcttggtaag 225  Q
    ||||| || ||||||||||||||||||||||| | |||||  |||||||| |||||||||| |||||    
T  33622758 ttgatagatttggtcgaagattcttgttcataaccgggggtgttatgatgtttgtctgctttgtaag 33622824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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