View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10865A_high_10 (Length: 378)

Name: NF10865A_high_10
Description: NF10865A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10865A_high_10
NF10865A_high_10
[»] chr7 (8 HSPs)
chr7 (47-215)||(22622675-22622844)
chr7 (48-214)||(23340474-23340639)
chr7 (268-368)||(24759474-24759574)
chr7 (272-341)||(1971096-1971165)
chr7 (266-340)||(43903418-43903493)
chr7 (261-326)||(10250052-10250115)
chr7 (47-108)||(23342880-23342942)
chr7 (266-327)||(13761779-13761840)
[»] chr5 (4 HSPs)
chr5 (267-359)||(4077837-4077929)
chr5 (268-368)||(40946710-40946810)
chr5 (273-367)||(16352103-16352197)
chr5 (269-359)||(29344762-29344852)
[»] chr8 (5 HSPs)
chr8 (267-355)||(38681136-38681224)
chr8 (268-368)||(26955412-26955512)
chr8 (266-368)||(8022722-8022824)
chr8 (277-355)||(38682400-38682477)
chr8 (268-368)||(42313906-42314006)
[»] chr2 (5 HSPs)
chr2 (267-366)||(26449092-26449191)
chr2 (266-368)||(22145616-22145718)
chr2 (267-355)||(38403354-38403442)
chr2 (267-327)||(4768477-4768537)
chr2 (268-340)||(31409704-31409776)
[»] chr6 (5 HSPs)
chr6 (272-368)||(23073409-23073505)
chr6 (268-368)||(18645950-18646050)
chr6 (271-340)||(8840653-8840722)
chr6 (314-368)||(34008653-34008707)
chr6 (313-368)||(9852146-9852202)
[»] chr3 (5 HSPs)
chr3 (268-368)||(52126885-52126985)
chr3 (268-366)||(29129130-29129228)
chr3 (266-368)||(43399448-43399550)
chr3 (273-341)||(53689246-53689314)
chr3 (266-366)||(19009627-19009726)
[»] chr1 (4 HSPs)
chr1 (268-366)||(29836239-29836337)
chr1 (268-341)||(40981593-40981666)
chr1 (267-342)||(50290432-50290507)
chr1 (266-294)||(39076268-39076296)
[»] chr4 (16 HSPs)
chr4 (268-340)||(14210419-14210491)
chr4 (268-340)||(14211388-14211460)
chr4 (268-340)||(14212339-14212411)
chr4 (268-340)||(14213308-14213380)
chr4 (268-340)||(14214276-14214348)
chr4 (268-340)||(14215245-14215317)
chr4 (268-340)||(14218116-14218188)
chr4 (268-340)||(14219086-14219158)
chr4 (268-340)||(14220055-14220127)
chr4 (268-340)||(14221006-14221078)
chr4 (268-340)||(14221975-14222047)
chr4 (268-340)||(14222944-14223016)
chr4 (268-340)||(14209468-14209540)
chr4 (268-340)||(14216214-14216286)
chr4 (268-340)||(14217165-14217237)
chr4 (268-368)||(30176040-30176140)


Alignment Details
Target: chr7 (Bit Score: 158; Significance: 5e-84; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 47 - 215
Target Start/End: Complemental strand, 22622844 - 22622675
Alignment:
Q  47 tgttaagaagctaaatagaacatcaacaaagtttttt-ctgcttcagcatacatgactttgttactctcttcattcaccacaagcttgaatggcacatac 145  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22622844 tgttaagaagctaaatagaacatcaacaaagtttttttctgcttcagcatacatgactttgttactctcttcattcaccacaagcttgaatggcacatac 22622745  T
Q  146 gcctcctctgtttgggtagaagtcatggaagcaaatagcaactagcaaacgatgtttggaattttatatt 215  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  22622744 gcctcctctgtttgggtagaagccatggaagcaaatagcaactagcaaacgatgtttggaattttatatt 22622675  T

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Target: chr7; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 48 - 214
Target Start/End: Original strand, 23340474 - 23340639
Alignment:
Q  48 gttaagaagctaaatagaacatcaacaaagttttttc-tgcttcagcatacatgactttgttactctcttcattcaccacaagcttgaatggcacatacg 146  Q
    |||||||||||||||||||||||| | ||||   ||| |||||||||| | ||||||||||| |||||||  ||||||||| | || |||||| || |      
T  23340474 gttaagaagctaaatagaacatcatcgaagtccattcctgcttcagcaaatatgactttgttgctctcttggttcaccacatgtttcaatggcgcagag- 23340572  T
Q  147 cctcctctgtttgggtagaa-gtcatggaagcaaatagcaactagcaaacgatgtttggaattttatat 214  Q
      || |||||||| |||||| | ||||| ||||| |||||||||||||||||||| |||||||||||||    
T  23340573 --tcttctgtttgagtagaaagccatggcagcaagtagcaactagcaaacgatgtatggaattttatat 23340639  T

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Target: chr7; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 268 - 368
Target Start/End: Original strand, 24759474 - 24759574
Alignment:
Q  268 atcctttatatctaatcctagcaaacactcctaacctaattgccaaaccctaatcctaaatttttggctccaattcgttctggccgttagattaatctat 367  Q
    |||||||||||||||||||||||||||    || ||||||| |  |||||||||||||| ||||||||||||| ||||||  |||||| |||||||||||    
T  24759474 atcctttatatctaatcctagcaaacatgtttaccctaatttcttaaccctaatcctaagtttttggctccaaatcgttccagccgttggattaatctat 24759573  T
Q  368 g 368  Q
    |    
T  24759574 g 24759574  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 272 - 341
Target Start/End: Original strand, 1971096 - 1971165
Alignment:
Q  272 tttatatctaatcctagcaaacactcctaacctaattgccaaaccctaatcctaaatttttggctccaat 341  Q
    |||||||||||||||||||||||  | || ||||||| |||||||||||  |||  ||||||||||||||    
T  1971096 tttatatctaatcctagcaaacatgcttaccctaatttccaaaccctaaatctacttttttggctccaat 1971165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 266 - 340
Target Start/End: Original strand, 43903418 - 43903493
Alignment:
Q  266 ttatcctttatatctaatcctagcaaacactcctaacctaattgccaaaccctaatcctaa-atttttggctccaa 340  Q
    ||||||||||||||||||  |||||||||  |||| ||||||||| ||||||||| | |||  |||||||||||||    
T  43903418 ttatcctttatatctaatgttagcaaacatgcctaccctaattgcaaaaccctaaacttaatttttttggctccaa 43903493  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 261 - 326
Target Start/End: Complemental strand, 10250115 - 10250052
Alignment:
Q  261 atcctttatcctttatatctaatcctagcaaacactcctaacctaattgccaaaccctaatcctaa 326  Q
    ||||||||||||||||||||||||||||| |||| ||| | | |||||  | ||||||||||||||    
T  10250115 atcctttatcctttatatctaatcctagctaacaatcccaccttaatt--ctaaccctaatcctaa 10250052  T

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Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 108
Target Start/End: Original strand, 23342880 - 23342942
Alignment:
Q  47 tgttaagaagctaaatagaacatcaacaaagt-tttttctgcttcagcatacatgactttgtt 108  Q
    ||||||||||||||| |||||||| |||||||  ||| ||||||||||| ||| |||||||||    
T  23342880 tgttaagaagctaaacagaacatccacaaagtcctttcctgcttcagcaaacaagactttgtt 23342942  T

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Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 327
Target Start/End: Original strand, 13761779 - 13761840
Alignment:
Q  266 ttatcctttatatctaatcctagcaaacactcctaacctaattgccaaaccctaatcctaaa 327  Q
    |||||||||||||||||||||||||||||  |  | |||||||||  || ||||||||||||    
T  13761779 ttatcctttatatctaatcctagcaaacatgcaaaccctaattgcataaacctaatcctaaa 13761840  T

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Target: chr5 (Bit Score: 61; Significance: 4e-26; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 267 - 359
Target Start/End: Original strand, 4077837 - 4077929
Alignment:
Q  267 tatcctttatatctaatcctagcaaacactcctaacctaattgccaaaccctaatcctaaatttttggctccaattcgttctggccgttagat 359  Q
    ||||||||||||||||||||||||||||  | || ||||||||||||||||||||||| | ||||||||||||| ||||| ||||||||||||    
T  4077837 tatcctttatatctaatcctagcaaacatgcttatcctaattgccaaaccctaatccttattttttggctccaaatcgttatggccgttagat 4077929  T

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Target: chr5; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 268 - 368
Target Start/End: Original strand, 40946710 - 40946810
Alignment:
Q  268 atcctttatatctaatcctagcaaacactcctaacctaattgccaaaccctaatcctaaatttttggctccaattcgttctggccgttagattaatctat 367  Q
    |||||||||||||||||||||||||||    || ||||||||||||||||||||| ||| ||||||||||||| || ||||||||||||||| |||||||    
T  40946710 atcctttatatctaatcctagcaaacatgtttaccctaattgccaaaccctaatcttaattttttggctccaaatcattctggccgttagataaatctat 40946809  T
Q  368 g 368  Q
    |    
T  40946810 g 40946810  T

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Target: chr5; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 273 - 367
Target Start/End: Complemental strand, 16352197 - 16352103
Alignment:
Q  273 ttatatctaatcctagcaaacactcctaacctaattgccaaaccctaatcctaaatttttggctccaattcgttctggccgttagattaatctat 367  Q
    ||||||||||||||||||||||  | || ||||||||||||||||||||||| | ||||||||||||| ||||| |||||||||||| |||||||    
T  16352197 ttatatctaatcctagcaaacatgcttaccctaattgccaaaccctaatccttattttttggctccaaatcgttatggccgttagatgaatctat 16352103  T

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Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 269 - 359
Target Start/End: Original strand, 29344762 - 29344852
Alignment:
Q  269 tcctttatatctaatcctagcaaacactcctaacc-taattgccaaaccctaatcctaaatttttggctccaattcgttctggccgttagat 359  Q
    ||||||||||||||||||||||  || | | |||| || ||| |||||||||||| ||| ||||| ||||||| ||||||||||||||||||    
T  29344762 tcctttatatctaatcctagcag-caatgcaaaccatatttgtcaaaccctaatcttaattttttagctccaaatcgttctggccgttagat 29344852  T

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Target: chr8 (Bit Score: 57; Significance: 1e-23; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 267 - 355
Target Start/End: Original strand, 38681136 - 38681224
Alignment:
Q  267 tatcctttatatctaatcctagcaaacactcctaacctaattgccaaaccctaatcctaaatttttggctccaattcgttctggccgtt 355  Q
    ||||||||||||||||||||||||||||  | || |||| |||| ||||||||||||||| ||||||||||||| ||||||||||||||    
T  38681136 tatcctttatatctaatcctagcaaacatgcttaccctatttgctaaaccctaatcctaattttttggctccaaatcgttctggccgtt 38681224  T

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Target: chr8; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 268 - 368
Target Start/End: Original strand, 26955412 - 26955512
Alignment:
Q  268 atcctttatatctaatcctagcaaacactcctaacctaattgccaaaccctaatcctaaatttttggctccaattcgttctggccgttagattaatctat 367  Q
    |||||||||||||||| ||||||||||    || ||||||||||||||||||||| ||| |||||| |||||| || ||||| ||||||||| |||||||    
T  26955412 atcctttatatctaattctagcaaacatgtttaccctaattgccaaaccctaatcttaattttttgactccaaatcattctgaccgttagataaatctat 26955511  T
Q  368 g 368  Q
    |    
T  26955512 g 26955512  T

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Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 266 - 368
Target Start/End: Original strand, 8022722 - 8022824
Alignment:
Q  266 ttatcctttatatctaatcctagcaaacactcctaacctaattgccaaaccctaatcctaaatttttggctccaattcgttctggccgttagattaatct 365  Q
    |||||||||||||||||||||||||   |    || ||||||| || |||||||||||||| ||||||||||||| | ||||  ||||||||||||||||    
T  8022722 ttatcctttatatctaatcctagcagtaatgtttaccctaatttcctaaccctaatcctaagtttttggctccaaattgttccagccgttagattaatct 8022821  T
Q  366 atg 368  Q
    |||    
T  8022822 atg 8022824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 277 - 355
Target Start/End: Original strand, 38682400 - 38682477
Alignment:
Q  277 atctaatcctagcaaacactcctaacctaattgccaaaccctaatcctaaatttttggctccaattcgttctggccgtt 355  Q
    ||||||||||||||||||  | || |||| |||| ||||||||||||||| ||||||||||||| ||||||||||||||    
T  38682400 atctaatcctagcaaacatgcttacccta-ttgctaaaccctaatcctaattttttggctccaaatcgttctggccgtt 38682477  T

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Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 268 - 368
Target Start/End: Complemental strand, 42314006 - 42313906
Alignment:
Q  268 atcctttatatctaatcctagcaaacactcctaacctaattgccaaaccctaatcctaaatttttggctccaattcgttctggccgttagattaatctat 367  Q
    ||||||||||||||||||| |||||||  |  | |||||||||| |||||||||||||||    |  |||||| | ||||||||||| |||| |||||||    
T  42314006 atcctttatatctaatcctggcaaacatgcaaaccctaattgcctaaccctaatcctaaaaaaataactccaaattgttctggccgtcagatgaatctat 42313907  T
Q  368 g 368  Q
    |    
T  42313906 g 42313906  T

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Target: chr2 (Bit Score: 56; Significance: 4e-23; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 267 - 366
Target Start/End: Original strand, 26449092 - 26449191
Alignment:
Q  267 tatcctttatatctaatcctagcaaacactcctaacctaattgccaaaccctaatcctaaatttttggctccaattcgttctggccgttagattaatcta 366  Q
    ||||||||||||||||||||||||||||  | || |||||||||||||||||||| |||| ||||||||||||| |  ||||| ||||||||| ||||||    
T  26449092 tatcctttatatctaatcctagcaaacatgcttaccctaattgccaaaccctaattctaattttttggctccaaattattctgaccgttagataaatcta 26449191  T

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Target: chr2; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 266 - 368
Target Start/End: Complemental strand, 22145718 - 22145616
Alignment:
Q  266 ttatcctttatatctaatcctagcaaacactcctaacctaattgccaaaccctaatcctaaatttttggctccaattcgttctggccgttagattaatct 365  Q
    |||||||||||||||||||||||||   |  | || ||||||| || |||||||||||||| ||||||||||||| | ||||  ||||||||||||||||    
T  22145718 ttatcctttatatctaatcctagcagtaatgcttaccctaatttcctaaccctaatcctaagtttttggctccaaattgttccagccgttagattaatct 22145619  T
Q  366 atg 368  Q
    |||    
T  22145618 atg 22145616  T

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Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 267 - 355
Target Start/End: Original strand, 38403354 - 38403442
Alignment:
Q  267 tatcctttatatctaatcctagcaaacactcctaacc-taattgccaaaccctaatcctaaatttttggctccaattcgttctggccgtt 355  Q
    ||||||||||||||||||||||||  || | | |||| || |||||||||||||||||||| ||||||||||||| ||||||||| ||||    
T  38403354 tatcctttatatctaatcctagcag-caatgcaaaccctatttgccaaaccctaatcctaattttttggctccaaatcgttctggtcgtt 38403442  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 267 - 327
Target Start/End: Original strand, 4768477 - 4768537
Alignment:
Q  267 tatcctttatatctaatcctagcaaacactcctaacctaattgccaaaccctaatcctaaa 327  Q
    |||||||||||||||||| |||||||||  | || |||||||| |||||||||| ||||||    
T  4768477 tatcctttatatctaatcttagcaaacatgcttatcctaattgtcaaaccctaaacctaaa 4768537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 268 - 340
Target Start/End: Complemental strand, 31409776 - 31409704
Alignment:
Q  268 atcctttatatctaatcctagcaaacactcctaacctaattgccaaaccctaatcctaaatttttggctccaa 340  Q
    ||||||||||| |||||||||||||||  | || ||||||| ||||||||| | ||||  |||||||||||||    
T  31409776 atcctttatatataatcctagcaaacatgcttaccctaatttccaaacccttaacctacttttttggctccaa 31409704  T

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Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 272 - 368
Target Start/End: Complemental strand, 23073505 - 23073409
Alignment:
Q  272 tttatatctaatcctagcaaacactcctaacctaattgccaaaccctaatcctaaatttttggctccaattcgttctggccgttagattaatctatg 368  Q
    ||||||||||||||| |||||||  | || |||||||| |||||||||||||||| |||||| |||||| ||||||||||||||| || ||||||||    
T  23073505 tttatatctaatccttgcaaacatgcttaccctaattgtcaaaccctaatcctaattttttgtctccaaatcgttctggccgttaaataaatctatg 23073409  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 268 - 368
Target Start/End: Original strand, 18645950 - 18646050
Alignment:
Q  268 atcctttatatctaatcctagcaaacactcctaacctaattgccaaaccctaatcctaaatttttggctccaattcgttctggccgttagattaatctat 367  Q
    |||||||||||||||||||||||   |    || ||||||| |  |||||||||||||| ||||||||||||| | ||||  ||||||||||||||||||    
T  18645950 atcctttatatctaatcctagcagtaatgtttaccctaatttcttaaccctaatcctaagtttttggctccaaattgttccagccgttagattaatctat 18646049  T
Q  368 g 368  Q
    |    
T  18646050 g 18646050  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 271 - 340
Target Start/End: Original strand, 8840653 - 8840722
Alignment:
Q  271 ctttatatctaatcctagcaaacactcctaacctaattgccaaaccctaatcctaaatttttggctccaa 340  Q
    ||||||||||||||||||||||||  | || ||||||||||||||| ||| ||||  |||| ||||||||    
T  8840653 ctttatatctaatcctagcaaacatgcttaccctaattgccaaaccttaaacctattttttcggctccaa 8840722  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 314 - 368
Target Start/End: Original strand, 34008653 - 34008707
Alignment:
Q  314 accctaatcctaaatttttggctccaattcgttctggccgttagattaatctatg 368  Q
    |||||||| |||| ||||||||||||| ||||||  |||||| ||||||||||||    
T  34008653 accctaattctaattttttggctccaaatcgttccagccgttggattaatctatg 34008707  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 313 - 368
Target Start/End: Original strand, 9852146 - 9852202
Alignment:
Q  313 aaccctaatcctaaa-tttttggctccaattcgttctggccgttagattaatctatg 368  Q
    ||||||||||||||  |||||||||||||||   |||| ||||||||||||||||||    
T  9852146 aaccctaatcctaatctttttggctccaatttagtctgaccgttagattaatctatg 9852202  T

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Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 268 - 368
Target Start/End: Original strand, 52126885 - 52126985
Alignment:
Q  268 atcctttatatctaatcctagcaaacactcctaacctaattgccaaaccctaatcctaaatttttggctccaattcgttctggccgttagattaatctat 367  Q
    |||||||||||||||||||||||||||  | || ||||||| |  |||||||||||||| ||||||||||||| ||||||  |||||| |||||||||||    
T  52126885 atcctttatatctaatcctagcaaacatgcttaccctaatttcttaaccctaatcctaagtttttggctccaaatcgttccagccgttggattaatctat 52126984  T
Q  368 g 368  Q
    |    
T  52126985 g 52126985  T

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Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 268 - 366
Target Start/End: Original strand, 29129130 - 29129228
Alignment:
Q  268 atcctttatatctaatcctagcaaacactcctaacctaattgccaaaccctaatcctaaatttttggctccaattcgttctggccgttagattaatcta 366  Q
    |||||||||||||||||||||||||||    || ||||||||||||||||||| ||||  ||||||||||||||   | ||| ||||||||| ||||||    
T  29129130 atcctttatatctaatcctagcaaacatgtttaccctaattgccaaaccctaaacctacttttttggctccaatctatcctgaccgttagatcaatcta 29129228  T

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Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 266 - 368
Target Start/End: Original strand, 43399448 - 43399550
Alignment:
Q  266 ttatcctttatatctaatcctagcaaacactcctaacctaattgccaaaccctaatcctaaatttttggctccaattcgttctggccgttagattaatct 365  Q
    |||||||||||||||||||||||||   |  | || ||||||| || |||| ||||||||| ||||||||||||| | ||||  ||||||||||||||||    
T  43399448 ttatcctttatatctaatcctagcagtaatgcttaccctaatttcctaaccttaatcctaagtttttggctccaaattgttccagccgttagattaatct 43399547  T
Q  366 atg 368  Q
    |||    
T  43399548 atg 43399550  T

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Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 273 - 341
Target Start/End: Original strand, 53689246 - 53689314
Alignment:
Q  273 ttatatctaatcctagcaaacactcctaacctaattgccaaaccctaatcctaaatttttggctccaat 341  Q
    |||||| |||||||||||||||  | || ||||||||||||||||||| ||||  ||||||||||||||    
T  53689246 ttatatttaatcctagcaaacatgcttaccctaattgccaaaccctaaacctacttttttggctccaat 53689314  T

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Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 266 - 366
Target Start/End: Complemental strand, 19009726 - 19009627
Alignment:
Q  266 ttatcctttatatctaatcctagcaaacactcctaacctaattgccaaaccctaatcctaaatttttggctccaattcgttctggccgttagattaatct 365  Q
    |||||||||||||||||||||||||||||  |  | |||||||||||| | |||| ||| | |||||||||||| ||  | ||| ||||||||| |||||    
T  19009726 ttatcctttatatctaatcctagcaaacaagcaaaccctaattgccaacctctaaacct-actttttggctccattttatcctgaccgttagatcaatct 19009628  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 268 - 366
Target Start/End: Original strand, 29836239 - 29836337
Alignment:
Q  268 atcctttatatctaatcctagcaaacactcctaacctaattgccaaaccctaatcctaaatttttggctccaattcgttctggccgttagattaatcta 366  Q
    |||||||||||||||||||||||||||    || ||||||||||||||||||| ||||  ||||||||||||||   | ||| ||||||||| ||||||    
T  29836239 atcctttatatctaatcctagcaaacatgtttaccctaattgccaaaccctaaacctacttttttggctccaatctatcctgaccgttagatcaatcta 29836337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 268 - 341
Target Start/End: Complemental strand, 40981666 - 40981593
Alignment:
Q  268 atcctttatatctaatcctagcaaacactcctaacctaattgccaaaccctaatcctaaatttttggctccaat 341  Q
    |||||||||||||||||||||||||||  | || ||||||| ||||||||||| ||||  ||||||||||||||    
T  40981666 atcctttatatctaatcctagcaaacatgcttaccctaatttccaaaccctaaacctacttttttggctccaat 40981593  T

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Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 267 - 342
Target Start/End: Original strand, 50290432 - 50290507
Alignment:
Q  267 tatcctttatatctaatcctagcaaacactcctaacctaattgccaaaccctaatcctaaatttttggctccaatt 342  Q
    ||||||||||||||||||||| ||||||  | |||||||| | ||||||||||| ||||  |||||||||||||||    
T  50290432 tatcctttatatctaatcctaacaaacatgcttaacctaaattccaaaccctaaacctatttttttggctccaatt 50290507  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 266 - 294
Target Start/End: Complemental strand, 39076296 - 39076268
Alignment:
Q  266 ttatcctttatatctaatcctagcaaaca 294  Q
    |||||||||||||||||||||||||||||    
T  39076296 ttatcctttatatctaatcctagcaaaca 39076268  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000009; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 268 - 340
Target Start/End: Complemental strand, 14210491 - 14210419
Alignment:
Q  268 atcctttatatctaatcctagcaaacactcctaacctaattgccaaaccctaatcctaaatttttggctccaa 340  Q
    |||||||||||||||||||||||||||  | || ||||||| ||||||||| | ||||  |||||||||||||    
T  14210491 atcctttatatctaatcctagcaaacatgcttaccctaatttccaaacccttaacctacttttttggctccaa 14210419  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 268 - 340
Target Start/End: Complemental strand, 14211460 - 14211388
Alignment:
Q  268 atcctttatatctaatcctagcaaacactcctaacctaattgccaaaccctaatcctaaatttttggctccaa 340  Q
    |||||||||||||||||||||||||||  | || ||||||| ||||||||| | ||||  |||||||||||||    
T  14211460 atcctttatatctaatcctagcaaacatgcttaccctaatttccaaacccttaacctacttttttggctccaa 14211388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 268 - 340
Target Start/End: Complemental strand, 14212411 - 14212339
Alignment:
Q  268 atcctttatatctaatcctagcaaacactcctaacctaattgccaaaccctaatcctaaatttttggctccaa 340  Q
    |||||||||||||||||||||||||||  | || ||||||| ||||||||| | ||||  |||||||||||||    
T  14212411 atcctttatatctaatcctagcaaacatgcttaccctaatttccaaacccttaacctacttttttggctccaa 14212339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 268 - 340
Target Start/End: Complemental strand, 14213380 - 14213308
Alignment:
Q  268 atcctttatatctaatcctagcaaacactcctaacctaattgccaaaccctaatcctaaatttttggctccaa 340  Q
    |||||||||||||||||||||||||||  | || ||||||| ||||||||| | ||||  |||||||||||||    
T  14213380 atcctttatatctaatcctagcaaacatgcttaccctaatttccaaacccttaacctacttttttggctccaa 14213308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 268 - 340
Target Start/End: Complemental strand, 14214348 - 14214276
Alignment:
Q  268 atcctttatatctaatcctagcaaacactcctaacctaattgccaaaccctaatcctaaatttttggctccaa 340  Q
    |||||||||||||||||||||||||||  | || ||||||| ||||||||| | ||||  |||||||||||||    
T  14214348 atcctttatatctaatcctagcaaacatgcttaccctaatttccaaacccttaacctacttttttggctccaa 14214276  T

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Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 268 - 340
Target Start/End: Complemental strand, 14215317 - 14215245
Alignment:
Q  268 atcctttatatctaatcctagcaaacactcctaacctaattgccaaaccctaatcctaaatttttggctccaa 340  Q
    |||||||||||||||||||||||||||  | || ||||||| ||||||||| | ||||  |||||||||||||    
T  14215317 atcctttatatctaatcctagcaaacatgcttaccctaatttccaaacccttaacctacttttttggctccaa 14215245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 268 - 340
Target Start/End: Complemental strand, 14218188 - 14218116
Alignment:
Q  268 atcctttatatctaatcctagcaaacactcctaacctaattgccaaaccctaatcctaaatttttggctccaa 340  Q
    |||||||||||||||||||||||||||  | || ||||||| ||||||||| | ||||  |||||||||||||    
T  14218188 atcctttatatctaatcctagcaaacatgcttaccctaatttccaaacccttaacctacttttttggctccaa 14218116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 268 - 340
Target Start/End: Complemental strand, 14219158 - 14219086
Alignment:
Q  268 atcctttatatctaatcctagcaaacactcctaacctaattgccaaaccctaatcctaaatttttggctccaa 340  Q
    |||||||||||||||||||||||||||  | || ||||||| ||||||||| | ||||  |||||||||||||    
T  14219158 atcctttatatctaatcctagcaaacatgcttaccctaatttccaaacccttaacctacttttttggctccaa 14219086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 268 - 340
Target Start/End: Complemental strand, 14220127 - 14220055
Alignment:
Q  268 atcctttatatctaatcctagcaaacactcctaacctaattgccaaaccctaatcctaaatttttggctccaa 340  Q
    |||||||||||||||||||||||||||  | || ||||||| ||||||||| | ||||  |||||||||||||    
T  14220127 atcctttatatctaatcctagcaaacatgcttaccctaatttccaaacccttaacctacttttttggctccaa 14220055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 268 - 340
Target Start/End: Complemental strand, 14221078 - 14221006
Alignment:
Q  268 atcctttatatctaatcctagcaaacactcctaacctaattgccaaaccctaatcctaaatttttggctccaa 340  Q
    |||||||||||||||||||||||||||  | || ||||||| ||||||||| | ||||  |||||||||||||    
T  14221078 atcctttatatctaatcctagcaaacatgcttaccctaatttccaaacccttaacctacttttttggctccaa 14221006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 268 - 340
Target Start/End: Complemental strand, 14222047 - 14221975
Alignment:
Q  268 atcctttatatctaatcctagcaaacactcctaacctaattgccaaaccctaatcctaaatttttggctccaa 340  Q
    |||||||||||||||||||||||||||  | || ||||||| ||||||||| | ||||  |||||||||||||    
T  14222047 atcctttatatctaatcctagcaaacatgcttaccctaatttccaaacccttaacctacttttttggctccaa 14221975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 268 - 340
Target Start/End: Complemental strand, 14223016 - 14222944
Alignment:
Q  268 atcctttatatctaatcctagcaaacactcctaacctaattgccaaaccctaatcctaaatttttggctccaa 340  Q
    |||||||||||||||||||||||||||  | || ||||||| ||||||||| | ||||  |||||||||||||    
T  14223016 atcctttatatctaatcctagcaaacatgcttaccctaatttccaaacccttaacctacttttttggctccaa 14222944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 268 - 340
Target Start/End: Complemental strand, 14209540 - 14209468
Alignment:
Q  268 atcctttatatctaatcctagcaaacactcctaacctaattgccaaaccctaatcctaaatttttggctccaa 340  Q
    ||||||||||||||||| |||||||||  | || ||||||| ||||||||| | ||||  |||||||||||||    
T  14209540 atcctttatatctaatcgtagcaaacatgcttaccctaatttccaaacccttaacctacttttttggctccaa 14209468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 268 - 340
Target Start/End: Complemental strand, 14216286 - 14216214
Alignment:
Q  268 atcctttatatctaatcctagcaaacactcctaacctaattgccaaaccctaatcctaaatttttggctccaa 340  Q
    ||||||||||| |||||||||||||||  | || ||||||| ||||||||| | ||||  |||||||||||||    
T  14216286 atcctttatatataatcctagcaaacatgcttaccctaatttccaaacccttaacctacttttttggctccaa 14216214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 268 - 340
Target Start/End: Complemental strand, 14217237 - 14217165
Alignment:
Q  268 atcctttatatctaatcctagcaaacactcctaacctaattgccaaaccctaatcctaaatttttggctccaa 340  Q
    ||||||||||||||||| |||||||||  | || ||||||| ||||||||| | ||||  |||||||||||||    
T  14217237 atcctttatatctaatcgtagcaaacatgcttaccctaatttccaaacccttaacctacttttttggctccaa 14217165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 268 - 368
Target Start/End: Original strand, 30176040 - 30176140
Alignment:
Q  268 atcctttatatctaatcctagcaaacactcctaacctaattgccaaaccctaatcctaaatttttggctccaattcgttctggccgttagattaatctat 367  Q
    ||||||||||| |||||||||||   |  | || |||||||  | |||||||||||||| ||||||||||||| | |||   ||||||||||||||||||    
T  30176040 atcctttatatttaatcctagcagtaatgcttaccctaattttctaaccctaatcctaagtttttggctccaaattgtttcagccgttagattaatctat 30176139  T
Q  368 g 368  Q
    |    
T  30176140 g 30176140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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