View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10865A_high_22 (Length: 278)

Name: NF10865A_high_22
Description: NF10865A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10865A_high_22
NF10865A_high_22
[»] chr5 (2 HSPs)
chr5 (9-71)||(22659720-22659782)
chr5 (167-240)||(22659883-22659955)
[»] chr3 (1 HSPs)
chr3 (9-62)||(28967870-28967923)


Alignment Details
Target: chr5 (Bit Score: 59; Significance: 5e-25; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 9 - 71
Target Start/End: Original strand, 22659720 - 22659782
Alignment:
Q  9 tggtgttcttccttgattttttcaagtaaatttgattccatcttttctgcatttagcttgtac 71  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  22659720 tggtgttcttcctcgattttttcaagtaaatttgattccatcttttctgcatttagcttgtac 22659782  T

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Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 167 - 240
Target Start/End: Original strand, 22659883 - 22659955
Alignment:
Q  167 tagagaatattttgtttgttatttgtcggtcaaagggtaaaggctactaaagccctcacattaggcctacaaac 240  Q
    ||||| ||||||| |||||||||||||||||||||||| ||||||| ||||||| |||||||||||||||||||    
T  22659883 tagaggatattttttttgttatttgtcggtcaaagggt-aaggctattaaagccgtcacattaggcctacaaac 22659955  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 9 - 62
Target Start/End: Original strand, 28967870 - 28967923
Alignment:
Q  9 tggtgttcttccttgattttttcaagtaaatttgattccatcttttctgcattt 62  Q
    |||||||||||||  |||| |||||||||| |||||| ||| ||||||||||||    
T  28967870 tggtgttcttcctatatttcttcaagtaaacttgatttcattttttctgcattt 28967923  T

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